Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HIS92_RS05065 Genome accession   NZ_CP051858
Coordinates   1030470..1031249 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025470..1036249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIS92_RS05040 (HIS92_05070) uppS 1026219..1026995 (-) 777 WP_000971296.1 isoprenyl transferase -
  HIS92_RS05045 (HIS92_05075) frr 1027081..1027638 (-) 558 WP_000531505.1 ribosome recycling factor -
  HIS92_RS05050 (HIS92_05080) pyrH 1027641..1028363 (-) 723 WP_000042669.1 UMP kinase -
  HIS92_RS05055 (HIS92_05085) tsf 1028430..1029317 (-) 888 WP_001018576.1 translation elongation factor Ts -
  HIS92_RS05060 (HIS92_05090) rpsB 1029421..1030122 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  HIS92_RS05065 (HIS92_05095) codY 1030470..1031249 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HIS92_RS05070 (HIS92_05100) hslU 1031327..1032718 (-) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  HIS92_RS05075 (HIS92_05105) hslV 1032741..1033283 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  HIS92_RS05080 (HIS92_05110) xerC 1033326..1034225 (-) 900 WP_001101244.1 tyrosine recombinase XerC -
  HIS92_RS05085 (HIS92_05115) trmFO 1034291..1035595 (-) 1305 WP_000213007.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=440973 HIS92_RS05065 WP_000421290.1 1030470..1031249(-) (codY) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=440973 HIS92_RS05065 WP_000421290.1 1030470..1031249(-) (codY) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459