Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   C248_RS08340 Genome accession   NC_018608
Coordinates   1704618..1705892 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus 08BA02176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699618..1710892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C248_RS08310 (C248_1663) mnmA 1699821..1700939 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  C248_RS08315 (C248_1664) - 1700940..1702082 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  C248_RS08320 (C248_1665) - 1702393..1703406 (+) 1014 WP_000985891.1 LLM class flavin-dependent oxidoreductase -
  C248_RS08325 (C248_1666) - 1703643..1703789 (-) 147 WP_000009235.1 SAS049 family protein -
  C248_RS08330 (C248_1667) - 1703829..1704011 (-) 183 WP_000752909.1 CsbD family protein -
  C248_RS08335 (C248_1668) - 1704111..1704533 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  C248_RS08340 (C248_1669) rarA 1704618..1705892 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  C248_RS08345 (C248_1670) - 1706053..1706826 (-) 774 WP_000682648.1 tRNA threonylcarbamoyladenosine dehydratase -
  C248_RS08350 (C248_1671) - 1706826..1706954 (-) 129 WP_014937034.1 hypothetical protein -
  C248_RS08355 (C248_1673) aspS 1707287..1709053 (-) 1767 WP_000044794.1 aspartate--tRNA ligase -
  C248_RS08360 (C248_1674) hisS 1709069..1710331 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=44086 C248_RS08340 WP_000102740.1 1704618..1705892(+) (rarA) [Staphylococcus aureus 08BA02176]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=44086 C248_RS08340 WP_000102740.1 1704618..1705892(+) (rarA) [Staphylococcus aureus 08BA02176]
GTGAGTACAGAACCATTAGCGTCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACACTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACACAATATAAATTTAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTAATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTTCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCTATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGCTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGCTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAATTTACTTAAACAAAGGCCATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment