Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HH195_RS02660 Genome accession   NZ_CP051754
Coordinates   601375..603234 (+) Length   619 a.a.
NCBI ID   WP_055258433.1    Uniprot ID   -
Organism   Sarcina sp. JB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 596375..608234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH195_RS02640 (HH195_02640) - 597013..597930 (-) 918 WP_196371473.1 patatin-like phospholipase family protein -
  HH195_RS02645 (HH195_02645) - 598229..598381 (+) 153 WP_156304290.1 hypothetical protein -
  HH195_RS02650 (HH195_02650) - 598497..598940 (-) 444 WP_058992907.1 MarR family winged helix-turn-helix transcriptional regulator -
  HH195_RS02655 (HH195_02655) - 599127..601382 (+) 2256 WP_196371474.1 ABC transporter ATP-binding protein -
  HH195_RS02660 (HH195_02660) rcrQ 601375..603234 (+) 1860 WP_055258433.1 ABC transporter ATP-binding protein Regulator
  HH195_RS02665 (HH195_02665) - 603379..603771 (+) 393 WP_055258435.1 DUF4430 domain-containing protein -
  HH195_RS02670 (HH195_02670) recQ 603934..605712 (+) 1779 WP_196371475.1 DNA helicase RecQ -
  HH195_RS02675 (HH195_02675) - 605835..607757 (+) 1923 WP_055258439.1 PrkA family serine protein kinase -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68548.60 Da        Isoelectric Point: 7.0666

>NTDB_id=440856 HH195_RS02660 WP_055258433.1 601375..603234(+) (rcrQ) [Sarcina sp. JB2]
MSNKSKSNPQSSGMGMGRGQKQQGSPQKAKDFKKAMGKLLSYLKPYRLSLVVVVIFAILSSIFSIVGPKILGNATTEIYS
GIMGKILGTNSAGINFIAIGKILLVLLVLYLLSAGFSYIQSYIVAGIVQKMSYSFRKQISEKMNRMPLKYFDKRSKGDVL
SILTNDVGMISENLNQSLTQVITSIVTLIGVLIMMFSISWIMTLIAIIILPVSGLLMGSIVKKSQKYFTEQQKYLGKVNG
EVEEIYGGHNVVKAFNGEDSAYESFEKLNKTLYSSAWKSQFLSGLMMPIMNFIGNFGYVLMSIVGGYLTILGAIQVGDIL
AFIQYIRSFTQPIAQLTQVANLMQTTAAACERVFEFLDEEEEVQVIENPVRDVNIKGDVAFKDVSFGYNEDKIIINDFTA
NIKAGQRVAIVGPTGAGKTTIVKLLMRFYDINKGSIMIDGHDIRDFNRNDLRDLFGMVLQETWLYNGSIMENIRYGKLTA
SDEDVIEAIKAAHANHFIEALPDGYNMELNEEASNISQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDN
LMKGRTSFIIAHRLSTIQDADLILVMKDGDIIEQGNHDELMAKGGFYSSLYNSQFDSVS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=440856 HH195_RS02660 WP_055258433.1 601375..603234(+) (rcrQ) [Sarcina sp. JB2]
ATGAGTAATAAAAGTAAGAGTAACCCTCAAAGCAGTGGTATGGGGATGGGACGTGGACAAAAACAACAAGGTTCGCCTCA
AAAAGCTAAAGATTTTAAGAAAGCTATGGGAAAACTTTTAAGTTATTTAAAACCATATAGATTATCATTGGTTGTAGTAG
TGATTTTTGCTATATTAAGTTCAATATTTTCAATTGTTGGGCCTAAAATTTTAGGAAATGCAACAACTGAAATATATAGC
GGTATAATGGGAAAAATACTTGGAACCAATTCGGCTGGAATTAATTTTATAGCCATAGGAAAAATACTTTTGGTGCTTTT
AGTATTATATTTGCTAAGTGCAGGTTTTTCATATATACAATCTTATATAGTTGCTGGGATAGTGCAAAAAATGTCCTATA
GTTTTAGAAAACAAATATCAGAAAAAATGAACCGTATGCCTCTTAAATATTTTGATAAAAGAAGTAAGGGTGATGTTTTA
TCTATATTAACTAATGATGTAGGAATGATAAGTGAAAACTTAAATCAAAGTTTAACACAAGTTATAACATCAATAGTTAC
ACTAATTGGTGTGCTTATAATGATGTTCTCTATAAGTTGGATTATGACGTTAATTGCAATAATAATTCTACCAGTTTCAG
GATTACTTATGGGTTCTATAGTTAAAAAATCTCAAAAGTATTTTACAGAACAACAAAAGTATTTAGGAAAAGTAAATGGT
GAAGTAGAAGAAATATACGGAGGACATAATGTAGTAAAGGCATTTAATGGAGAAGATAGTGCTTATGAATCCTTTGAAAA
GTTAAATAAAACTTTATATTCTTCAGCATGGAAGTCTCAATTTTTATCAGGTCTTATGATGCCTATAATGAATTTTATAG
GAAATTTTGGATATGTTTTAATGTCAATAGTTGGAGGATACCTTACTATTTTAGGTGCAATACAAGTAGGTGATATATTA
GCATTTATCCAATATATAAGATCATTTACACAACCTATAGCACAATTAACTCAAGTGGCTAATCTTATGCAAACAACAGC
AGCAGCTTGTGAAAGAGTATTTGAATTCCTAGATGAAGAAGAGGAAGTTCAAGTTATTGAAAATCCAGTTAGAGATGTTA
ATATCAAAGGAGATGTTGCATTTAAAGATGTTAGCTTTGGATATAATGAAGATAAAATAATAATAAATGATTTTACAGCT
AATATTAAGGCTGGACAAAGAGTTGCAATAGTTGGTCCAACAGGAGCTGGTAAAACTACAATTGTAAAACTTCTTATGCG
TTTTTATGATATAAATAAGGGCTCAATTATGATTGATGGTCATGATATTAGAGATTTCAATCGTAATGATTTAAGAGATT
TATTTGGTATGGTACTTCAAGAAACATGGTTATATAATGGAAGTATAATGGAAAATATAAGATATGGAAAATTAACAGCT
AGTGATGAAGATGTTATAGAAGCTATAAAAGCTGCTCATGCAAATCACTTTATAGAAGCACTTCCTGATGGATATAATAT
GGAACTAAATGAAGAAGCATCTAATATATCACAAGGTCAAAAGCAACTTTTAACAATAGCACGTGCTATTTTAGCAGACC
CTAAAATTCTTATATTGGATGAAGCTACAAGTTCAGTTGATACTCGTACTGAAGTTTTAATACAAAAGGCTATGGATAAC
TTAATGAAGGGAAGAACAAGTTTTATAATAGCTCACAGATTATCAACAATACAAGATGCAGATCTTATATTAGTTATGAA
AGATGGAGATATTATAGAACAAGGAAATCATGATGAGTTAATGGCTAAGGGGGGATTCTATTCATCTTTATATAACAGTC
AATTTGACAGTGTAAGTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(51-332)

ABC transporter (ABC_tran)

(396-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.107

94.83

0.485