Detailed information NTG0440200

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: HHJ99_RS02165
• Genome accession: NZ_CP051643
• Coordinates: 421604..424054 (+)
• Length: 816 a.a.
• NCBI ID: WP_044466735.1
• Uniprot ID: -
• Organism: Staphylococcus caprae strain SY333
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 416604..429054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ99_RS02135 (HHJ99_02135)	-	416903..417085 (+)	183	WP_002443234.1	CsbD family protein	-
HHJ99_RS02140 (HHJ99_02140)	-	417116..417259 (+)	144	WP_002443232.1	SAS049 family protein	-
HHJ99_RS02145 (HHJ99_02145)	-	417320..418315 (-)	996	WP_002443230.1	LLM class flavin-dependent oxidoreductase	-
HHJ99_RS02150 (HHJ99_02150)	-	418574..419716 (+)	1143	WP_002443229.1	cysteine desulfurase family protein	-
HHJ99_RS02155 (HHJ99_02155)	mnmA	419716..420834 (+)	1119	WP_002443227.1	tRNA 2-thiouridine(34) synthase MnmA	-
HHJ99_RS02160 (HHJ99_02160)	-	420931..421602 (+)	672	WP_044466736.1	tetratricopeptide repeat protein	-
HHJ99_RS02165 (HHJ99_02165)	recD2	421604..424054 (+)	2451	WP_044466735.1	ATP-dependent RecD-like DNA helicase	Machinery gene
HHJ99_RS02170 (HHJ99_02170)	alaS	424403..427033 (+)	2631	WP_044466734.1	alanine--tRNA ligase	-
HHJ99_RS02175 (HHJ99_02175)	-	427097..427357 (+)	261	WP_002443220.1	IreB family regulatory phosphoprotein	-
HHJ99_RS02180 (HHJ99_02180)	ruvX	427360..427788 (+)	429	WP_002443217.1	Holliday junction resolvase RuvX	-
HHJ99_RS02185 (HHJ99_02185)	-	427803..428129 (+)	327	WP_002443216.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 92036.66 Da
• Isoelectric Point: 4.5038

>NTDB_id=440200 HHJ99_RS02165 WP_044466735.1 421604..424054(+) (recD2) [Staphylococcus caprae strain SY333]
MSDPTLFDYSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQVVEHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAQNIVNALGENAINDILNHPEILQKVPSLPKKKQQQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYMSDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIAANSPERLKAGLLYILEEECIKQG
HTYLPNSYVIDPTQEMLNDGTDVTIARETLEEMILQLSEEKKLILSDEQVSIPSLYYSELKSVQNLYRIKTNTTKLKEIE
QSDLQMHIGEIESYNKVNYAASQKEALETAMNSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIIFVGDEDQ
LPSVGPGQVFKDLIDSKTIPRVNLTEVYRQQDGSSIIDLAHRMKMGEPIDITQRFHDRSFINCTSDQIPDVVDKVVQSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKKDDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFEIGLNTKGQERLTQLNGLLTSYFGNHQVDNESADILTTENKIINNETLDEQEQAIIDESQKDIILSESTIFKID
PMINMGEMTPYDFAER

Nucleotide

• Length: 2451 bp

>NTDB_id=440200 HHJ99_RS02165 WP_044466735.1 421604..424054(+) (recD2) [Staphylococcus caprae strain SY333]
ATGTCTGACCCTACACTATTTGATTATTCAATGATCAAAGGCACAGTAGATGCTATATTATTTCAAAATAATGATAACTT
CTATACAGTTCTTAAAGTAGACACTATTGAAACAAATGAATCATTTGATAGTATGCCAACAGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTGTACACCTTTAAAGGGCAAGTTGTAGAGCATCCACGGTATGGTAAACAATTAAAAGCTGAA
ACCTTTGAAAAGGAATTGCCTCAAACAAAAGATGCCATTGTGAGTTATTTATCTAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCACAGAATATCGTTAATGCATTAGGTGAGAACGCAATTAATGATATATTAAATCATCCTGAAATTTTGCAAA
AGGTGCCGAGTTTGCCTAAGAAAAAGCAACAGCAAATTGCTGAACAAATTAGTGCAAATCAAGAATCTGAGAAAATTATG
ATTCGATTACATGATTTAGGTTTCGGTCCAAAACTGTCGATGGCTATCTATCAATTCTATATGAGTGATACGCTTAAAAT
TTTGGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATCGGGTTTAATAAAGCTGACCAACTTGCACGTAATA
TTGGTATTGCTGCGAATTCACCTGAACGTTTGAAAGCGGGTTTGTTATATATACTTGAAGAAGAATGTATCAAACAGGGA
CACACATATCTTCCTAATTCATATGTCATTGATCCGACACAAGAGATGTTAAACGATGGTACTGATGTAACTATTGCTAG
AGAAACACTTGAAGAAATGATATTGCAACTTTCTGAAGAGAAAAAATTAATTCTGAGTGATGAACAAGTATCCATTCCAA
GCTTATATTATTCCGAACTGAAAAGTGTCCAAAATTTATATCGAATTAAGACAAACACAACAAAATTAAAAGAAATCGAA
CAATCTGATCTCCAAATGCATATTGGAGAAATAGAATCGTACAATAAAGTAAATTATGCCGCATCACAAAAAGAAGCACT
TGAAACAGCAATGAATTCGAAAGTAATGCTTCTAACGGGTGGTCCAGGTACAGGTAAAACGACTGTTATCAAAGGGATTG
TTGAACTTTATGCAGAAATTCATGGTTTATCCCTAGATTATGACGACTATAATGAAGATGATTACCCTGTGGTATTAGCT
GCTCCAACCGGACGTGCGTCCAAACGACTTCAAGAATCGACAGGTCTTGAAGCGATGACGATTCATAGACTTATTGGATG
GAATCAAGAGACACAACCTGAAGATATTTTAGACAATGAAATTAATGCACGATTAATCATTATAGATGAAATGTCTATGG
TTGATACGTGGCTTTTCCATCAATTTTTAAGCGCAGTTCCATTAGATGCACAAATCATATTTGTTGGAGATGAAGATCAG
CTTCCTTCAGTCGGCCCAGGTCAAGTATTCAAAGATCTTATTGATTCTAAAACAATCCCCCGTGTCAATTTAACTGAGGT
ATACCGTCAACAAGATGGCTCAAGTATTATCGATTTAGCGCATCGGATGAAGATGGGTGAGCCCATAGATATTACTCAAC
GGTTTCACGATCGTAGTTTTATTAACTGCACCTCTGACCAGATACCTGATGTCGTAGATAAAGTTGTTCAGAGTGCAGTG
AGTAAAGGTTATAATATGAGTGATATCCAAGTCCTTGCGCCAATGTATAAAGGGAATGCTGGTATTAAACGCCTTAACCA
AGTATTACAATCGATTTTAAATCCTAAAAAGGATGATAGTCGTGAAATTGAATTTGGTGATGTTGTTTTCAGAAAAGGCG
ATAAAGTACTTCAATTAGTGAATCGACCGAACGATAATATTTTCAACGGGGATATTGGTGTAATTGTAGGCATTTTCTGG
GCAAAAGAGAATGCTCTAAATAAAGATGTCTTAGTCGTGGATTTCGAAGGGAACGAAATTACGTTCACACGACAAGATTT
ACTAGAATTAACCCACGCCTATTGTACATCAATTCATAAATCGCAAGGTTCTGAATTCCCAATTGTTATTATGCCTATTG
TTAAACAATATTTCCGAATGTTACAGCGCCCAATTCTATACACAGGTTTAACACGTGCTAAGCAATCGCTTGTGTTACTG
GGTGATCCCCAAGCATTTGAAATTGGCTTGAACACGAAAGGCCAAGAACGTTTAACACAATTAAATGGCTTGCTTACCTC
TTATTTTGGTAATCATCAAGTTGATAATGAATCAGCTGACATTTTAACTACTGAAAATAAAATCATCAACAATGAAACGT
TGGATGAACAAGAACAAGCGATCATAGATGAATCTCAAAAAGATATAATATTAAGTGAATCGACGATATTTAAAATAGAC
CCAATGATAAATATGGGAGAAATGACACCTTACGACTTTGCAGAGCGTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.692	99.632	0.495