Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG574_RS00095 Genome accession   NZ_CP051541
Coordinates   14076..14339 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9076..19339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS00070 (HG574_00070) groES 9360..9716 (-) 357 WP_000671934.1 co-chaperone GroES -
  HG574_RS00075 (HG574_00075) dnaG 10003..11682 (+) 1680 WP_202144847.1 DNA primase -
  HG574_RS00080 (HG574_00080) - 11679..12731 (+) 1053 WP_187878475.1 MnmA/TRMU family protein -
  HG574_RS00085 (HG574_00085) - 12823..13650 (+) 828 WP_202144848.1 DUF5718 family protein -
  HG574_RS00090 (HG574_00090) comB2 13795..14076 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HG574_RS00095 (HG574_00095) comB3 14076..14339 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HG574_RS00100 (HG574_00100) comB4 14341..16704 (+) 2364 WP_202144849.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG574_RS00110 (HG574_00110) - 17006..18346 (+) 1341 WP_165567358.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=439675 HG574_RS00095 WP_000584956.1 14076..14339(+) (comB3) [Helicobacter pylori strain LIM-001]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439675 HG574_RS00095 WP_000584956.1 14076..14339(+) (comB3) [Helicobacter pylori strain LIM-001]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCCAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1