Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG576_RS00095 Genome accession   NZ_CP051539
Coordinates   13717..13980 (+) Length   87 a.a.
NCBI ID   WP_000584951.1    Uniprot ID   A0A1V3B0B6
Organism   Helicobacter pylori strain LIM-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8717..18980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG576_RS00070 (HG576_00070) groES 9005..9361 (-) 357 WP_000671926.1 co-chaperone GroES -
  HG576_RS00075 (HG576_00075) dnaG 9644..11323 (+) 1680 WP_097566964.1 DNA primase -
  HG576_RS00080 (HG576_00080) - 11320..12372 (+) 1053 WP_024368730.1 MnmA/TRMU family protein -
  HG576_RS00085 (HG576_00085) - 12462..13289 (+) 828 WP_024368731.1 DUF5718 family protein -
  HG576_RS00090 (HG576_00090) comB2 13436..13717 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HG576_RS00095 (HG576_00095) comB3 13717..13980 (+) 264 WP_000584951.1 hypothetical protein Machinery gene
  HG576_RS00100 (HG576_00100) comB4 13982..16345 (+) 2364 WP_202138892.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG576_RS00110 (HG576_00110) - 16647..17987 (+) 1341 WP_202138893.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9978.03 Da        Isoelectric Point: 9.5290

>NTDB_id=439633 HG576_RS00095 WP_000584951.1 13717..13980(+) (comB3) [Helicobacter pylori strain LIM-003]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439633 HG576_RS00095 WP_000584951.1 13717..13980(+) (comB3) [Helicobacter pylori strain LIM-003]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V3B0B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989