Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG578_RS00090 Genome accession   NZ_CP051537
Coordinates   13588..13869 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8588..18869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG578_RS00070 (HG578_00070) groES 9153..9509 (-) 357 WP_000671934.1 co-chaperone GroES -
  HG578_RS00075 (HG578_00075) dnaG 9795..11474 (+) 1680 WP_202134804.1 DNA primase -
  HG578_RS00080 (HG578_00080) - 11471..12523 (+) 1053 WP_202134805.1 MnmA/TRMU family protein -
  HG578_RS00085 (HG578_00085) - 12616..13443 (+) 828 WP_202134806.1 DUF5718 family protein -
  HG578_RS00090 (HG578_00090) comB2 13588..13869 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HG578_RS00095 (HG578_00095) comB3 13869..14132 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HG578_RS00100 (HG578_00100) comB4 14134..16497 (+) 2364 WP_202134807.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG578_RS00110 (HG578_00110) - 16802..18142 (+) 1341 WP_202134808.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=439612 HG578_RS00090 WP_001272690.1 13588..13869(+) (comB2) [Helicobacter pylori strain LIM-005]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439612 HG578_RS00090 WP_001272690.1 13588..13869(+) (comB2) [Helicobacter pylori strain LIM-005]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATTGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1