Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG581_RS02255 Genome accession   NZ_CP051535
Coordinates   471391..471681 (+) Length   96 a.a.
NCBI ID   WP_202138299.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466391..476681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS02230 (HG581_02225) hofC 466783..468369 (+) 1587 WP_202138295.1 outer membrane beta-barrel protein HofC -
  HG581_RS02235 (HG581_02230) hofD 468442..469839 (+) 1398 WP_120895870.1 outer membrane beta-barrel protein HofD -
  HG581_RS02240 (HG581_02235) - 469903..470691 (+) 789 WP_202138296.1 integrase -
  HG581_RS02245 (HG581_02240) - 470694..470918 (+) 225 WP_202138297.1 hypothetical protein -
  HG581_RS02250 (HG581_02245) - 470915..471394 (+) 480 WP_202138298.1 hypothetical protein -
  HG581_RS02255 (HG581_02250) comB2 471391..471681 (+) 291 WP_202138299.1 TrbC/VirB2 family protein Machinery gene
  HG581_RS02260 (HG581_02255) comB3 471691..471954 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG581_RS02265 (HG581_02260) - 471966..472202 (+) 237 WP_202138300.1 hypothetical protein -
  HG581_RS02270 (HG581_02265) - 472202..474766 (+) 2565 WP_202138301.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HG581_RS07945 - 474768..474902 (+) 135 WP_077654653.1 type IV secretion system protein VirB7 -
  HG581_RS02275 (HG581_02270) - 474895..476061 (+) 1167 WP_202138302.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10968.31 Da        Isoelectric Point: 11.1589

>NTDB_id=439581 HG581_RS02255 WP_202138299.1 471391..471681(+) (comB2) [Helicobacter pylori strain LIM-008]
MKKLRHFRKLIAFLGFSPLLLQADITTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALVQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=439581 HG581_RS02255 WP_202138299.1 471391..471681(+) (comB2) [Helicobacter pylori strain LIM-008]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATAACTAC
ATTTTTTAATAGCATTGAACAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTGGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGTTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

58.621

90.625

0.531