Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG582_RS00090 Genome accession   NZ_CP051534
Coordinates   13452..13733 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain LIM-009     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8452..18733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG582_RS00070 (HG582_00070) groES 9018..9374 (-) 357 WP_042636805.1 co-chaperone GroES -
  HG582_RS00075 (HG582_00075) dnaG 9661..11340 (+) 1680 WP_202143921.1 DNA primase -
  HG582_RS00080 (HG582_00080) - 11337..12389 (+) 1053 WP_202143922.1 MnmA/TRMU family protein -
  HG582_RS00085 (HG582_00085) - 12479..13306 (+) 828 WP_001154959.1 DUF5718 family protein -
  HG582_RS00090 (HG582_00090) comB2 13452..13733 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG582_RS00095 (HG582_00095) comB3 13733..13996 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  HG582_RS00100 (HG582_00100) comB4 13998..16361 (+) 2364 WP_202143923.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG582_RS00110 (HG582_00110) - 16667..18007 (+) 1341 WP_039083743.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=439549 HG582_RS00090 WP_001272686.1 13452..13733(+) (comB2) [Helicobacter pylori strain LIM-009]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439549 HG582_RS00090 WP_001272686.1 13452..13733(+) (comB2) [Helicobacter pylori strain LIM-009]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989