Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HG420_RS03735 Genome accession   NZ_CP051518
Coordinates   724685..725473 (+) Length   262 a.a.
NCBI ID   WP_015081898.1    Uniprot ID   -
Organism   Lactococcus cremoris strain F     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 719685..730473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG420_RS03710 (HG420_03720) - 719997..720773 (+) 777 Protein_698 DNA/RNA non-specific endonuclease -
  HG420_RS12710 (HG420_03725) - 720951..721160 (+) 210 WP_014571884.1 hypothetical protein -
  HG420_RS03720 (HG420_03730) - 721172..721411 (+) 240 WP_015081896.1 hypothetical protein -
  HG420_RS03725 (HG420_03735) - 721609..723189 (+) 1581 WP_015081897.1 heme/copper-type cytochrome/quinol oxidase subunit 1 -
  HG420_RS03730 (HG420_03740) - 723319..724533 (+) 1215 WP_011675219.1 pyridoxal phosphate-dependent aminotransferase -
  HG420_RS03735 (HG420_03745) codY 724685..725473 (+) 789 WP_015081898.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HG420_RS03740 (HG420_03750) gatC 725751..726056 (+) 306 WP_011675221.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HG420_RS03745 (HG420_03755) gatA 726056..727516 (+) 1461 WP_015081899.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  HG420_RS03750 (HG420_03760) gatB 727541..728974 (+) 1434 WP_011675223.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29139.44 Da        Isoelectric Point: 4.5248

>NTDB_id=439462 HG420_RS03735 WP_015081898.1 724685..725473(+) (codY) [Lactococcus cremoris strain F]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMHLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=439462 HG420_RS03735 WP_015081898.1 724685..725473(+) (codY) [Lactococcus cremoris strain F]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCATCTTGGAACATTTATTATGTGGC
GCGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTTGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.237

100

0.992
  codY Bacillus subtilis subsp. subtilis str. 168

47.244

96.947

0.458