Detailed information NTG0439448

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: INP70_RS08570
• Genome accession: NZ_CP063420
• Coordinates: 1900024..1901373 (-)
• Length: 449 a.a.
• NCBI ID: WP_000073969.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain VC_hf7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1895024..1906373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP70_RS08555	bioB	1896040..1897092 (-)	1053	WP_000453785.1	biotin synthase BioB	-
INP70_RS08560	bioA	1897225..1898505 (+)	1281	WP_000362271.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
INP70_RS08565	serS	1898613..1899920 (-)	1308	WP_000887349.1	serine--tRNA ligase	-
INP70_RS08570	rarA	1900024..1901373 (-)	1350	WP_000073969.1	replication-associated recombination protein A	Machinery gene
INP70_RS08575	lolA	1901398..1901994 (-)	597	WP_001045827.1	outer membrane lipoprotein chaperone LolA	-
INP70_RS08580	-	1902090..1902710 (-)	621	WP_001109754.1	YecA family protein	-
INP70_RS08585	dusC	1902876..1903847 (+)	972	WP_001887387.1	tRNA dihydrouridine(16) synthase DusC	-
INP70_RS08590	-	1903880..1905349 (-)	1470	WP_002023016.1	sensor domain-containing diguanylate cyclase	-
INP70_RS08595	-	1905516..1906310 (-)	795	WP_000620368.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49842.37 Da
• Isoelectric Point: 6.0310

>NTDB_id=439448 INP70_RS08570 WP_000073969.1 1900024..1901373(-) (rarA) [Vibrio cholerae strain VC_hf7]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLISLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK

Nucleotide

• Length: 1350 bp

>NTDB_id=439448 INP70_RS08570 WP_000073969.1 1900024..1901373(-) (rarA) [Vibrio cholerae strain VC_hf7]
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCTCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACATATCTTAGGGCCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCCAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATCCGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGTCG
ACGCACTATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGACG
GTACGGTCACTTTTATTGGCGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCATCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACTGAACGCGGGCTTGG
CAAAGTGGCGGCGGTATTTGCTGATAACGTGTTGGATCGCCTAGCCGAACTGGTCAATGGCGATGCGCGCATGTCGCTCA
ATTATCTTGAGCTGCTGTACGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAG
GTCGCTGGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAGTCGAT
TCGAGGTTCTGATCCCGATGCGGCTCTGTATTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCGCGGGGCATGCAAGTGGCGCTTTCTGCATGGGAT
TGCTTTACCCGCGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTACCTCGCCTGCGCGCCGAAAAG
CAATGCAGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATCTGCCTGAGTTTGAAGTGCCGCCGCATCTGC
GTAATGCCCCAACACGATTGATGAAAGATCTTGGTTATGGCGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (192-268)

• ATPase family associated with various cellular activities (AAA) (AAA) (54-160)

• MgsA AAA+ ATPase C terminal (MgsA_C) (269-435)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.314	0.361