Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG557_RS00085 Genome accession   NZ_CP051510
Coordinates   11273..11554 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain ASHA-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6273..16554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG557_RS00065 (HG557_00065) groES 6839..7195 (-) 357 WP_000671941.1 co-chaperone GroES -
  HG557_RS00070 (HG557_00070) dnaG 7480..9159 (+) 1680 WP_202135604.1 DNA primase -
  HG557_RS00075 (HG557_00075) - 9156..10208 (+) 1053 WP_202135605.1 MnmA/TRMU family protein -
  HG557_RS00080 (HG557_00080) - 10300..11127 (+) 828 WP_202148171.1 DUF5718 family protein -
  HG557_RS00085 (HG557_00085) comB2 11273..11554 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG557_RS00090 (HG557_00090) comB3 11554..11817 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HG557_RS00095 (HG557_00095) comB4 11819..14182 (+) 2364 WP_202166039.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG557_RS00105 (HG557_00105) - 14412..15842 (+) 1431 WP_202132907.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=439384 HG557_RS00085 WP_001272686.1 11273..11554(+) (comB2) [Helicobacter pylori strain ASHA-008]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439384 HG557_RS00085 WP_001272686.1 11273..11554(+) (comB2) [Helicobacter pylori strain ASHA-008]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989