Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IPV38_RS25160 Genome accession   NZ_CP063396
Coordinates   5424960..5425385 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain ST167_d26burn     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5419960..5430385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV38_RS25145 (IPV38_25140) pilX 5420524..5421111 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  IPV38_RS25150 (IPV38_25145) pilY1 5421123..5424614 (+) 3492 WP_023086645.1 type 4a pilus biogenesis protein PilY1 -
  IPV38_RS25155 (IPV38_25150) pilY2 5424616..5424963 (+) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  IPV38_RS25160 (IPV38_25155) comF 5424960..5425385 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  IPV38_RS25165 (IPV38_25160) ispH 5425432..5426376 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IPV38_RS25170 (IPV38_25165) fkpB 5426462..5426902 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  IPV38_RS25175 (IPV38_25170) lspA 5426895..5427404 (-) 510 WP_003110420.1 signal peptidase II -
  IPV38_RS25180 (IPV38_25175) ileS 5427397..5430228 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=439374 IPV38_RS25160 WP_003094721.1 5424960..5425385(+) (comF) [Pseudomonas aeruginosa strain ST167_d26burn]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=439374 IPV38_RS25160 WP_003094721.1 5424960..5425385(+) (comF) [Pseudomonas aeruginosa strain ST167_d26burn]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383