Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG560_RS00095 Genome accession   NZ_CP051507
Coordinates   13718..13981 (+) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain SHIM-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8718..18981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG560_RS00070 (HG560_00070) groES 9011..9367 (-) 357 WP_000671959.1 co-chaperone GroES -
  HG560_RS00075 (HG560_00075) dnaG 9642..11321 (+) 1680 WP_000601511.1 DNA primase -
  HG560_RS00080 (HG560_00080) - 11318..12370 (+) 1053 WP_000802571.1 MnmA/TRMU family protein -
  HG560_RS00085 (HG560_00085) - 12462..13289 (+) 828 WP_202170302.1 DUF5718 family protein -
  HG560_RS00090 (HG560_00090) comB2 13437..13718 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG560_RS00095 (HG560_00095) comB3 13718..13981 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HG560_RS00100 (HG560_00100) comB4 13983..16346 (+) 2364 WP_202170303.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG560_RS00110 (HG560_00110) - 16577..18007 (+) 1431 WP_195154951.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=439322 HG560_RS00095 WP_000584955.1 13718..13981(+) (comB3) [Helicobacter pylori strain SHIM-002]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439322 HG560_RS00095 WP_000584955.1 13718..13981(+) (comB3) [Helicobacter pylori strain SHIM-002]
ATGATTATCCTGTCAGCGAGCGTGAAGAATCTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977