Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG561_RS00090 Genome accession   NZ_CP051506
Coordinates   11814..12077 (+) Length   87 a.a.
NCBI ID   WP_000584955.1    Uniprot ID   K7YLH7
Organism   Helicobacter pylori strain SHIM-007     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6814..17077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG561_RS00065 (HG561_00065) groES 7110..7466 (-) 357 WP_000671956.1 co-chaperone GroES -
  HG561_RS00070 (HG561_00070) dnaG 7741..9420 (+) 1680 WP_202168474.1 DNA primase -
  HG561_RS00075 (HG561_00075) - 9417..10469 (+) 1053 WP_202168475.1 MnmA/TRMU family protein -
  HG561_RS00080 (HG561_00080) - 10561..11388 (+) 828 WP_202168476.1 DUF5718 family protein -
  HG561_RS00085 (HG561_00085) comB2 11533..11814 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG561_RS00090 (HG561_00090) comB3 11814..12077 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HG561_RS00095 (HG561_00095) comB4 12079..14442 (+) 2364 WP_202168477.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG561_RS00105 (HG561_00105) - 14673..16103 (+) 1431 WP_195154951.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10048.12 Da        Isoelectric Point: 9.5507

>NTDB_id=439301 HG561_RS00090 WP_000584955.1 11814..12077(+) (comB3) [Helicobacter pylori strain SHIM-007]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439301 HG561_RS00090 WP_000584955.1 11814..12077(+) (comB3) [Helicobacter pylori strain SHIM-007]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YLH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977