Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG562_RS01205 Genome accession   NZ_CP051505
Coordinates   250068..250358 (+) Length   96 a.a.
NCBI ID   WP_000736104.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245068..255358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG562_RS01175 (HG562_01175) - 245533..245766 (+) 234 WP_202170338.1 ribbon-helix-helix domain-containing protein -
  HG562_RS01180 (HG562_01180) radA 245879..247225 (+) 1347 WP_014534194.1 DNA repair protein RadA -
  HG562_RS01185 (HG562_01185) msrB 247348..248427 (+) 1080 WP_000866564.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HG562_RS01190 (HG562_01190) - 248580..249368 (+) 789 WP_001140588.1 hypothetical protein -
  HG562_RS01195 (HG562_01195) - 249371..249595 (+) 225 WP_000188956.1 hypothetical protein -
  HG562_RS01200 (HG562_01200) - 249592..250071 (+) 480 WP_000571647.1 hypothetical protein -
  HG562_RS01205 (HG562_01205) comB2 250068..250358 (+) 291 WP_000736104.1 TrbC/VirB2 family protein Machinery gene
  HG562_RS01210 (HG562_01210) comB3 250368..250631 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG562_RS01215 (HG562_01215) - 250643..250879 (+) 237 WP_000806906.1 hypothetical protein -
  HG562_RS01220 (HG562_01220) - 250879..251762 (+) 884 Protein_241 transporter -
  HG562_RS01225 (HG562_01225) tnpA 251953..252390 (+) 438 WP_041199789.1 IS200/IS605 family transposase -
  HG562_RS01230 (HG562_01230) - 252353..253500 (+) 1148 Protein_243 transposase -
  HG562_RS01235 (HG562_01235) - 253555..255258 (+) 1704 Protein_244 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10958.29 Da        Isoelectric Point: 11.1589

>NTDB_id=439286 HG562_RS01205 WP_000736104.1 250068..250358(+) (comB2) [Helicobacter pylori strain SHIM-010]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=439286 HG562_RS01205 WP_000736104.1 250068..250358(+) (comB2) [Helicobacter pylori strain SHIM-010]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATGACTAC
ATTTTTTAATAGCATTGAACAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTGGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542