Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG564_RS00090 Genome accession   NZ_CP051503
Coordinates   11805..12068 (+) Length   87 a.a.
NCBI ID   WP_000584940.1    Uniprot ID   A0AB32X6E0
Organism   Helicobacter pylori strain SHIM-014     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6805..17068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS00065 (HG564_00065) groES 7100..7456 (-) 357 WP_000671957.1 co-chaperone GroES -
  HG564_RS00070 (HG564_00070) dnaG 7731..9410 (+) 1680 WP_202171883.1 DNA primase -
  HG564_RS00075 (HG564_00075) - 9407..10459 (+) 1053 WP_000802574.1 MnmA/TRMU family protein -
  HG564_RS00080 (HG564_00080) - 10551..11378 (+) 828 WP_001154882.1 DUF5718 family protein -
  HG564_RS00085 (HG564_00085) comB2 11524..11805 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG564_RS00090 (HG564_00090) comB3 11805..12068 (+) 264 WP_000584940.1 hypothetical protein Machinery gene
  HG564_RS00095 (HG564_00095) comB4 12070..14433 (+) 2364 WP_202171884.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG564_RS00105 (HG564_00105) - 14664..16094 (+) 1431 WP_195154951.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=439236 HG564_RS00090 WP_000584940.1 11805..12068(+) (comB3) [Helicobacter pylori strain SHIM-014]
MIILSASVKNLREISIKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439236 HG564_RS00090 WP_000584940.1 11805..12068(+) (comB3) [Helicobacter pylori strain SHIM-014]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGATTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966