Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG566_RS00090 Genome accession   NZ_CP051501
Coordinates   11534..11797 (+) Length   87 a.a.
NCBI ID   WP_202164545.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6534..16797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS00065 (HG566_00065) groES 6828..7184 (-) 357 WP_154569771.1 co-chaperone GroES -
  HG566_RS00070 (HG566_00070) dnaG 7460..9142 (+) 1683 WP_202164541.1 DNA primase -
  HG566_RS00075 (HG566_00075) - 9139..10191 (+) 1053 WP_202164543.1 MnmA/TRMU family protein -
  HG566_RS00080 (HG566_00080) - 10279..11106 (+) 828 WP_097689152.1 DUF5718 family protein -
  HG566_RS00085 (HG566_00085) comB2 11253..11534 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HG566_RS00090 (HG566_00090) comB3 11534..11797 (+) 264 WP_202164545.1 competence protein ComB Machinery gene
  HG566_RS00095 (HG566_00095) comB4 11799..14162 (+) 2364 WP_202164547.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG566_RS00105 (HG566_00105) - 14350..15810 (+) 1461 WP_202164549.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10060.11 Da        Isoelectric Point: 9.8829

>NTDB_id=439194 HG566_RS00090 WP_202164545.1 11534..11797(+) (comB3) [Helicobacter pylori strain PUNO-002]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKSYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439194 HG566_RS00090 WP_202164545.1 11534..11797(+) (comB3) [Helicobacter pylori strain PUNO-002]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAAAGCTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954