Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG568_RS00085 Genome accession   NZ_CP051499
Coordinates   11265..11546 (+) Length   93 a.a.
NCBI ID   WP_120835798.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6265..16546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG568_RS00065 (HG568_00065) groES 6841..7197 (-) 357 WP_154569771.1 co-chaperone GroES -
  HG568_RS00070 (HG568_00070) dnaG 7472..9151 (+) 1680 WP_202167595.1 DNA primase -
  HG568_RS00075 (HG568_00075) - 9148..10200 (+) 1053 WP_202167596.1 MnmA/TRMU family protein -
  HG568_RS00080 (HG568_00080) - 10292..11119 (+) 828 WP_202167597.1 DUF5718 family protein -
  HG568_RS00085 (HG568_00085) comB2 11265..11546 (+) 282 WP_120835798.1 TrbC/VirB2 family protein Machinery gene
  HG568_RS00090 (HG568_00090) comB3 11546..11809 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HG568_RS00095 (HG568_00095) comB4 11811..14174 (+) 2364 WP_202167598.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG568_RS00105 (HG568_00105) - 14496..15836 (+) 1341 WP_202168076.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10569.84 Da        Isoelectric Point: 9.1450

>NTDB_id=439150 HG568_RS00085 WP_120835798.1 11265..11546(+) (comB2) [Helicobacter pylori strain PUNO-004]
MSTHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439150 HG568_RS00085 WP_120835798.1 11265..11546(+) (comB2) [Helicobacter pylori strain PUNO-004]
ATGTCCACTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978