Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG570_RS00090 Genome accession   NZ_CP051497
Coordinates   11558..11821 (+) Length   87 a.a.
NCBI ID   WP_000584962.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-007     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6558..16821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG570_RS00065 (HG570_00065) groES 6852..7208 (-) 357 WP_000671927.1 co-chaperone GroES -
  HG570_RS00070 (HG570_00070) dnaG 7484..9163 (+) 1680 WP_202141732.1 DNA primase -
  HG570_RS00075 (HG570_00075) - 9160..10212 (+) 1053 WP_202141733.1 MnmA/TRMU family protein -
  HG570_RS00080 (HG570_00080) - 10304..11131 (+) 828 WP_202141734.1 DUF5718 family protein -
  HG570_RS00085 (HG570_00085) comB2 11277..11558 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG570_RS00090 (HG570_00090) comB3 11558..11821 (+) 264 WP_000584962.1 hypothetical protein Machinery gene
  HG570_RS00095 (HG570_00095) comB4 11823..14186 (+) 2364 WP_202141735.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG570_RS00105 (HG570_00105) - 14416..15846 (+) 1431 WP_202141736.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=439110 HG570_RS00090 WP_000584962.1 11558..11821(+) (comB3) [Helicobacter pylori strain PUNO-007]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439110 HG570_RS00090 WP_000584962.1 11558..11821(+) (comB3) [Helicobacter pylori strain PUNO-007]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATCATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966