Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG571_RS00095 Genome accession   NZ_CP051496
Coordinates   13735..13998 (+) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8735..18998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS00070 (HG571_00070) groES 9030..9386 (-) 357 WP_000671958.1 co-chaperone GroES -
  HG571_RS00075 (HG571_00075) dnaG 9661..11340 (+) 1680 WP_202140745.1 DNA primase -
  HG571_RS00080 (HG571_00080) - 11337..12389 (+) 1053 WP_202140746.1 MnmA/TRMU family protein -
  HG571_RS00085 (HG571_00085) - 12481..13308 (+) 828 WP_202140747.1 DUF5718 family protein -
  HG571_RS00090 (HG571_00090) comB2 13454..13735 (+) 282 WP_077663813.1 TrbC/VirB2 family protein Machinery gene
  HG571_RS00095 (HG571_00095) comB3 13735..13998 (+) 264 WP_000584942.1 hypothetical protein Machinery gene
  HG571_RS00100 (HG571_00100) comB4 14000..16363 (+) 2364 WP_202140748.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG571_RS00110 (HG571_00110) - 16683..18023 (+) 1341 WP_202140749.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=439087 HG571_RS00095 WP_000584942.1 13735..13998(+) (comB3) [Helicobacter pylori strain PUNO-008]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=439087 HG571_RS00095 WP_000584942.1 13735..13998(+) (comB3) [Helicobacter pylori strain PUNO-008]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966