Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG579_RS05210 Genome accession   NZ_CP051493
Coordinates   1119996..1120280 (+) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori strain LIM-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1114996..1125280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS05180 (HG579_05170) guaA 1115430..1116956 (-) 1527 WP_202133564.1 glutamine-hydrolyzing GMP synthase -
  HG579_RS05185 (HG579_05175) - 1116967..1117455 (-) 489 WP_202133565.1 hypothetical protein -
  HG579_RS05190 (HG579_05180) - 1117625..1118506 (-) 882 Protein_1028 molybdopterin dinucleotide binding domain-containing protein -
  HG579_RS05195 (HG579_05185) - 1118556..1119344 (+) 789 WP_202133567.1 integrase -
  HG579_RS05200 (HG579_05190) - 1119347..1119523 (+) 177 WP_202133568.1 hypothetical protein -
  HG579_RS05205 (HG579_05195) - 1119520..1120008 (+) 489 WP_202133569.1 hypothetical protein -
  HG579_RS05210 (HG579_05200) comB2 1119996..1120280 (+) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  HG579_RS05215 (HG579_05205) comB3 1120292..1120555 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  HG579_RS05220 (HG579_05210) - 1120567..1120803 (+) 237 WP_001168532.1 hypothetical protein -
  HG579_RS05225 (HG579_05215) - 1120803..1122196 (+) 1394 Protein_1035 transporter -
  HG579_RS05230 (HG579_05220) - 1122255..1123583 (-) 1329 WP_202133570.1 RNA-guided endonuclease TnpB family protein -
  HG579_RS05235 (HG579_05225) tnpA 1123620..1124036 (+) 417 WP_202133571.1 IS200/IS605 family transposase -
  HG579_RS05240 (HG579_05230) - 1124217..1125161 (-) 945 WP_000362459.1 CpaF/VirB11 family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=439032 HG579_RS05210 WP_000413637.1 1119996..1120280(+) (comB2) [Helicobacter pylori strain LIM-006]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=439032 HG579_RS05210 WP_000413637.1 1119996..1120280(+) (comB2) [Helicobacter pylori strain LIM-006]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553