Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG579_RS00090 Genome accession   NZ_CP051493
Coordinates   13734..14015 (+) Length   93 a.a.
NCBI ID   WP_001272691.1    Uniprot ID   K2KII6
Organism   Helicobacter pylori strain LIM-006     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8734..19015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS00070 (HG579_00070) groES 9297..9653 (-) 357 WP_202133895.1 co-chaperone GroES -
  HG579_RS00075 (HG579_00075) dnaG 9941..11620 (+) 1680 WP_202133896.1 DNA primase -
  HG579_RS00080 (HG579_00080) - 11617..12669 (+) 1053 WP_202133897.1 MnmA/TRMU family protein -
  HG579_RS00085 (HG579_00085) - 12760..13587 (+) 828 WP_202133898.1 DUF5718 family protein -
  HG579_RS00090 (HG579_00090) comB2 13734..14015 (+) 282 WP_001272691.1 TrbC/VirB2 family protein Machinery gene
  HG579_RS00095 (HG579_00095) comB3 14015..14278 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HG579_RS00100 (HG579_00100) comB4 14280..16643 (+) 2364 WP_202133899.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG579_RS00110 (HG579_00110) - 16856..18286 (+) 1431 WP_202133900.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10511.76 Da        Isoelectric Point: 9.1450

>NTDB_id=439017 HG579_RS00090 WP_001272691.1 13734..14015(+) (comB2) [Helicobacter pylori strain LIM-006]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGVF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439017 HG579_RS00090 WP_001272691.1 13734..14015(+) (comB2) [Helicobacter pylori strain LIM-006]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTGGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAGTTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2KII6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989