Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IPV46_RS25400 Genome accession   NZ_CP063388
Coordinates   5426523..5426948 (+) Length   141 a.a.
NCBI ID   WP_031686578.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST1076_d100blood1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5421523..5431948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV46_RS25385 (IPV46_25385) pilX 5422093..5422680 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  IPV46_RS25390 (IPV46_25390) pilY1 5422692..5426177 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  IPV46_RS25395 (IPV46_25395) pilY2 5426179..5426526 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  IPV46_RS25400 (IPV46_25400) comF 5426523..5426948 (+) 426 WP_031686578.1 type 4a pilus minor pilin PilE Machinery gene
  IPV46_RS25405 (IPV46_25405) ispH 5426995..5427939 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IPV46_RS25410 (IPV46_25410) fkpB 5428025..5428465 (-) 441 WP_031686579.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  IPV46_RS25415 (IPV46_25415) lspA 5428458..5428967 (-) 510 WP_031686580.1 signal peptidase II -
  IPV46_RS25420 (IPV46_25420) ileS 5428960..5431791 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15307.36 Da        Isoelectric Point: 10.0198

>NTDB_id=438552 IPV46_RS25400 WP_031686578.1 5426523..5426948(+) (comF) [Pseudomonas aeruginosa strain ST1076_d100blood1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSVNS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=438552 IPV46_RS25400 WP_031686578.1 5426523..5426948(+) (comF) [Pseudomonas aeruginosa strain ST1076_d100blood1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTAGCCAAGCTGGGCATGAGTTCGGTCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376