Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HC660_RS13410 Genome accession   NZ_CP051464
Coordinates   2556649..2559009 (-) Length   786 a.a.
NCBI ID   WP_168748347.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2551649..2564009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS13390 (HC660_25590) - 2551726..2553279 (+) 1554 WP_168748345.1 SH3 domain-containing protein -
  HC660_RS13395 (HC660_25600) dtd 2553306..2553746 (-) 441 WP_168748346.1 D-aminoacyl-tRNA deacylase -
  HC660_RS13400 (HC660_25610) relA 2553759..2555963 (-) 2205 WP_010335122.1 GTP diphosphokinase -
  HC660_RS13405 (HC660_25620) - 2556131..2556643 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  HC660_RS13410 (HC660_25630) recJ 2556649..2559009 (-) 2361 WP_168748347.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HC660_RS13415 (HC660_25640) - 2559076..2559411 (-) 336 WP_168748348.1 lipopolysaccharide assembly LapA domain-containing protein -
  HC660_RS13420 (HC660_25650) - 2559489..2559986 (-) 498 WP_168748349.1 cation:proton antiporter regulatory subunit -
  HC660_RS13425 (HC660_25660) secDF 2560146..2562359 (-) 2214 WP_029441375.1 protein translocase subunit SecDF -
  HC660_RS13430 (HC660_25670) - 2562397..2562693 (-) 297 WP_010335127.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88462.02 Da        Isoelectric Point: 4.9815

>NTDB_id=438501 HC660_RS13410 WP_168748347.1 2556649..2559009(-) (recJ) [Bacillus mojavensis strain UCMB5075]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGEWPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDQFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADHTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEENIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETKALLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LVRLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=438501 HC660_RS13410 WP_168748347.1 2556649..2559009(-) (recJ) [Bacillus mojavensis strain UCMB5075]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGAGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCGAGACTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTTGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCAGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCCAATGAACAGGCGTTTCGTTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATCGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGAGTAGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
GGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAGCTGATTAAGCTCTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATCTGTTGATGTCAGAGGACCAGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCGATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATTAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAGGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACCATACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATATTGTGCCCGGCT
CAAAAATTTCGATTGTTGGCGAAATGTCGATCAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGCGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGTACGTTTGCTAGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.384

100

0.934