Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HC660_RS13335 Genome accession   NZ_CP051464
Coordinates   2539521..2541917 (-) Length   798 a.a.
NCBI ID   WP_168748340.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2534521..2546917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS13315 (HC660_25450) - 2537405..2538466 (-) 1062 WP_168748339.1 AI-2E family transporter -
  HC660_RS13320 - 2538581..2538715 (-) 135 WP_010335109.1 YrzQ family protein -
  HC660_RS13325 (HC660_25460) - 2538737..2538928 (-) 192 WP_010335110.1 hypothetical protein -
  HC660_RS13330 (HC660_25470) - 2538939..2539418 (-) 480 WP_229146667.1 PRC-barrel domain-containing protein -
  HC660_RS13335 (HC660_25480) recD2 2539521..2541917 (-) 2397 WP_168748340.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HC660_RS13340 (HC660_25490) - 2541942..2542598 (-) 657 WP_081720842.1 tetratricopeptide repeat protein -
  HC660_RS13345 (HC660_25500) mnmA 2542647..2543762 (-) 1116 WP_168748341.1 tRNA 2-thiouridine(34) synthase MnmA -
  HC660_RS13350 (HC660_25510) - 2543791..2544933 (-) 1143 WP_168748342.1 cysteine desulfurase family protein -
  HC660_RS13355 (HC660_25520) cymR 2544953..2545369 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  HC660_RS13360 (HC660_25530) - 2545571..2546836 (+) 1266 WP_010335115.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89079.63 Da        Isoelectric Point: 5.0274

>NTDB_id=438500 HC660_RS13335 WP_168748340.1 2539521..2541917(-) (recD2) [Bacillus mojavensis strain UCMB5075]
MQQHPDQLKMEEEPFLKGTVNTVIYHNDANLYTVLKVKVTETSEAIEDKVVSVTGYFPALQEEETYTFYGKTVTHPKFGL
QFQAEHFKKEIPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGDRAINKILADSSVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVRDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETKQLIIETQTLLNQSAADGQRIAEMDAANAIIALGENKDIVIEDERCYFPSLFFAEQNVAKRVRQIASQT
EYDDQFPESEFLMALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSDYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHNQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHEMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSAQTAEMDAELAALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=438500 HC660_RS13335 WP_168748340.1 2539521..2541917(-) (recD2) [Bacillus mojavensis strain UCMB5075]
GTGCAGCAGCACCCGGATCAGCTGAAAATGGAGGAGGAGCCCTTTTTAAAAGGGACAGTAAACACCGTCATTTATCACAA
TGACGCCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCTATTGAAGATAAAGTCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAAACCGTTACTCACCCAAAGTTCGGACTG
CAATTTCAAGCTGAGCACTTCAAAAAGGAGATCCCGACAACAAAAGAAGGCGTCATTCAGTATTTGTCGAGCGATCTGTT
TGAAGGAATCGGTAAAAAAACCGCTGAAGAGATTGTGAAAAAGCTGGGTGACAGAGCGATTAATAAAATTTTGGCTGATT
CTTCAGTCCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGACACCCTTGCCGGTGCCCTGCAGCGGCATCAGGGA
CTGGAGCAAATTATGATTTCGCTGAATCAATTTGGCTTCGGCCCTCAGCTGTCTATGAAAATCTACCAGGCCTATGAATC
CGAGACGCTGGAAAAAATTCAGGAGAACCCTTATCAGCTTGTAAGAGATGTGGAAGGCATCGGGTTTGGAAAAGCAGATG
AGCTCGGCGGAAGAATGGGGCTCTCAGGGAATCATCCTGAGCGGGTAAAAGCGGCTATTTTATACACGCTAGAAACGACA
TGCCTGTCAGAAGGGCATACGTACATAGAAACGAAACAGCTGATTATCGAAACCCAAACGCTGTTAAACCAGTCAGCAGC
AGATGGGCAGCGCATTGCAGAAATGGATGCCGCTAACGCGATTATTGCGCTTGGAGAAAATAAGGATATTGTCATAGAAG
ATGAACGATGTTACTTTCCGTCGCTGTTTTTCGCTGAACAAAATGTGGCAAAGCGTGTGAGACAGATCGCAAGCCAAACT
GAATATGACGACCAGTTTCCTGAATCGGAATTCCTGATGGCTTTGGGAGAATTGGAAGAGCGTATGAATGTTCAGTACGC
GCCGAGTCAGAAGGAAGCGATACAAAAAGCGCTGTCGTCACCGATGCTTCTTTTAACGGGAGGACCGGGTACAGGAAAAA
CAACGGTAATCAGAGGCATTGTGGAATTGTATGGAGAACTTCACGGTGTTTCACTTGATCCGTCGGATTATAAAAAAGAT
GAAGCCTTTCCGATTGTGCTGGCCGCGCCTACAGGCAGAGCGGCGAAACGAATGAGTGAGTCAACTGGTCTTCCGGCTGT
TACGATACACCGGCTGCTCGGCTGGAACGGTGCGGAAGGATTTACTCATACAGAGGACCAGCCAATTGAAGGGAAGCTTT
TGATTATCGATGAAGCGAGTATGCTCGATATATGGCTTGCGAATCATTTGTTTAAAGCGATCCCTGATCATAATCAAATT
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGACCCGGTCAAGTGCTCAGAGACCTTTTGGCATCCCAGGTGAT
TCCGACTGTAAGACTGACAGACATCTATCGACAAGCGGAAGGATCGTCCATTGTCGAGCTTGCCCACGAGATGAAAAACG
GGCTGCTTCCAAATAACCTGACTGCTCCGACAAAGGATCGTTCCTTTATTCGCTGCGGTGGTTCGCAAATTAAAGAAGTG
GTTGAGAAGGTTGTCGCGAATGCATTGAAAAAAGGATATACGGCAAAAGATATTCAGGTTCTCGCCCCGATGTACAGAGG
GAAAGCTGGAATCAATGAGCTGAATGTGATGCTGCAGGATATTTTAAACCCTCCAAAAGAAAAGCGGAGGGAAATTAAGT
TCGGCGACGTTGTCTATAGAACCGGGGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTTAACGGCGAC
ATTGGAGAAATCACTTCCATTTTCTATGCGAAGGAAAACACAGAAAAAGAAGACATGGCTGTTGTCTCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGATTTCAGTCAGTTTACTCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGCAGTG
AATTTCCGATCGTGGTTCTTCCTGTAGTGAAGGGCTACTATAGAATGCTCAGAAGAAACCTTCTATATACCGCTATCACG
AGGGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAAGCGCTGGAGTGGGGCGTGAAAAATAATGACGCGACTGTCAG
ACAGACCTCACTAAAAAACAGGCTGTCAGCGCAGACGGCTGAAATGGATGCTGAGCTTGCAGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTGCACGACGCAAATATCGGAATGGAAGGCATTACGCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

95.859

99.875

0.957