Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HC660_RS08775 Genome accession   NZ_CP051464
Coordinates   1694248..1695027 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus mojavensis strain UCMB5075     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689248..1700027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS08755 (HC660_16770) trmFO 1689942..1691249 (+) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HC660_RS08760 (HC660_16780) xerC 1691317..1692231 (+) 915 WP_010334240.1 tyrosine recombinase XerC -
  HC660_RS08765 (HC660_16790) clpQ 1692244..1692789 (+) 546 WP_010334241.1 ATP-dependent protease subunit ClpQ -
  HC660_RS08770 (HC660_16800) hslU 1692797..1694209 (+) 1413 WP_256203217.1 HslU--HslV peptidase ATPase subunit -
  HC660_RS08775 (HC660_16810) codY 1694248..1695027 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HC660_RS08780 (HC660_16820) flgB 1695410..1695799 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  HC660_RS08785 (HC660_16830) flgC 1695799..1696251 (+) 453 WP_010334245.1 flagellar basal body rod protein FlgC -
  HC660_RS08790 (HC660_16840) fliE 1696262..1696582 (+) 321 WP_029441259.1 flagellar hook-basal body complex protein FliE -
  HC660_RS08795 (HC660_16850) fliF 1696628..1698238 (+) 1611 WP_010334246.1 flagellar basal-body MS-ring/collar protein FliF -
  HC660_RS08800 (HC660_16860) fliG 1698251..1699267 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  HC660_RS08805 (HC660_16870) fliH 1699260..1700012 (+) 753 WP_168747821.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=438480 HC660_RS08775 WP_003220850.1 1694248..1695027(+) (codY) [Bacillus mojavensis strain UCMB5075]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=438480 HC660_RS08775 WP_003220850.1 1694248..1695027(+) (codY) [Bacillus mojavensis strain UCMB5075]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTTCTCGGGTACTCTATCA
ACCAGCAAATTGAAAATGACCGCATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAATAGTGAGTATACTGCTTTTCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AGTTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACTC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGTGCTGGAGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATCAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467