Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HC660_RS08745 Genome accession   NZ_CP051464
Coordinates   1686701..1687600 (+) Length   299 a.a.
NCBI ID   WP_168747817.1    Uniprot ID   -
Organism   Bacillus mojavensis strain UCMB5075     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1681701..1692600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS08725 (HC660_16710) - 1682370..1684100 (+) 1731 WP_168747812.1 hypothetical protein -
  HC660_RS08730 (HC660_16720) - 1684097..1684378 (+) 282 WP_168747814.1 FlhB-like flagellar biosynthesis protein -
  HC660_RS08735 (HC660_16730) sucC 1684552..1685709 (+) 1158 WP_168747815.1 ADP-forming succinate--CoA ligase subunit beta -
  HC660_RS08740 (HC660_16740) sucD 1685738..1686640 (+) 903 WP_010334236.1 succinate--CoA ligase subunit alpha -
  HC660_RS08745 (HC660_16750) dprA 1686701..1687600 (+) 900 WP_168747817.1 DNA-processing protein DprA Machinery gene
  HC660_RS08750 (HC660_16760) topA 1687791..1689866 (+) 2076 WP_168747819.1 type I DNA topoisomerase -
  HC660_RS08755 (HC660_16770) trmFO 1689942..1691249 (+) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HC660_RS08760 (HC660_16780) xerC 1691317..1692231 (+) 915 WP_010334240.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33039.26 Da        Isoelectric Point: 8.7216

>NTDB_id=438479 HC660_RS08745 WP_168747817.1 1686701..1687600(+) (dprA) [Bacillus mojavensis strain UCMB5075]
MDQAAACLITCRINQLLSPSLLLKWWKADPLMSLSNPSCALETASQGKVKTAALKNKIEEQYPKLQHLLSVYHQQGIEVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEYMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPERNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=438479 HC660_RS08745 WP_168747817.1 1686701..1687600(+) (dprA) [Bacillus mojavensis strain UCMB5075]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAATCAATTATTATCCCCTTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCATTAATGTCACTGTCAAACCCTTCATGCGCATTAGAAACCGCTTCACAAGGCAAAGTAAAGACTGCGGCAT
TAAAAAATAAAATAGAAGAACAATATCCCAAACTTCAGCATTTACTCTCTGTATACCATCAGCAAGGCATTGAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCTGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGCGTAAAATAGGAATTGTAGGTACGCGGCATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCG
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAATACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATTATAAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAGAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATCCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAGAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829