Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HC661_RS08375 Genome accession   NZ_CP051463
Coordinates   1643403..1644182 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UCMB5140     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638403..1649182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC661_RS08355 (HC661_16080) trmFO 1639090..1640397 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HC661_RS08360 (HC661_16090) xerC 1640467..1641384 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  HC661_RS08365 (HC661_16100) hslV 1641400..1641945 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HC661_RS08370 (HC661_16110) hslU 1641962..1643365 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  HC661_RS08375 (HC661_16120) codY 1643403..1644182 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HC661_RS08380 (HC661_16130) flgB 1644535..1644924 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HC661_RS08385 (HC661_16140) flgC 1644924..1645376 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  HC661_RS08390 (HC661_16150) fliE 1645387..1645707 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HC661_RS08395 (HC661_16160) fliF 1645750..1647360 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  HC661_RS08400 (HC661_16170) fliG 1647373..1648389 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HC661_RS08405 (HC661_16180) fliH 1648382..1649136 (+) 755 Protein_1613 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=438405 HC661_RS08375 WP_003154263.1 1643403..1644182(+) (codY) [Bacillus velezensis strain UCMB5140]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=438405 HC661_RS08375 WP_003154263.1 1643403..1644182(+) (codY) [Bacillus velezensis strain UCMB5140]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTGAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471