Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IPV48_RS25380 Genome accession   NZ_CP063386
Coordinates   5418733..5419158 (+) Length   141 a.a.
NCBI ID   WP_031686578.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ST1076_d118limb1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5413733..5424158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV48_RS25365 (IPV48_25360) pilX 5414303..5414890 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  IPV48_RS25370 (IPV48_25365) pilY1 5414902..5418387 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  IPV48_RS25375 (IPV48_25370) pilY2 5418389..5418736 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  IPV48_RS25380 (IPV48_25375) comF 5418733..5419158 (+) 426 WP_031686578.1 type 4a pilus minor pilin PilE Machinery gene
  IPV48_RS25385 (IPV48_25380) ispH 5419205..5420149 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IPV48_RS25390 (IPV48_25385) fkpB 5420235..5420675 (-) 441 WP_031686579.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  IPV48_RS25395 (IPV48_25390) lspA 5420668..5421177 (-) 510 WP_031686580.1 signal peptidase II -
  IPV48_RS25400 (IPV48_25395) ileS 5421170..5424001 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15307.36 Da        Isoelectric Point: 10.0198

>NTDB_id=438348 IPV48_RS25380 WP_031686578.1 5418733..5419158(+) (comF) [Pseudomonas aeruginosa strain ST1076_d118limb1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSVNS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=438348 IPV48_RS25380 WP_031686578.1 5418733..5419158(+) (comF) [Pseudomonas aeruginosa strain ST1076_d118limb1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTAGCCAAGCTGGGCATGAGTTCGGTCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376