Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IN859_RS03535 Genome accession   NZ_CP063349
Coordinates   704870..705337 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain BS15R-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699870..710337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IN859_RS03490 (IN859_03490) rplP 699980..700390 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  IN859_RS03495 (IN859_03495) rpsC 700403..701104 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  IN859_RS03500 (IN859_03500) rplV 701122..701454 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  IN859_RS03505 (IN859_03505) rpsS 701469..701747 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  IN859_RS03510 (IN859_03510) rplB 701764..702585 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  IN859_RS03515 (IN859_03515) rplW 702603..702905 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  IN859_RS03520 (IN859_03520) rplD 702902..703507 (-) 606 WP_203008599.1 50S ribosomal protein L4 -
  IN859_RS03525 (IN859_03525) rplC 703518..704147 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  IN859_RS03530 (IN859_03530) rpsJ 704180..704491 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  IN859_RS03535 (IN859_03535) pilD 704870..705337 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  IN859_RS03540 (IN859_03540) bfr 705334..705810 (-) 477 WP_000675515.1 bacterioferritin -
  IN859_RS03545 (IN859_03545) bfd 705883..706077 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  IN859_RS03550 (IN859_03550) tuf 706260..707444 (-) 1185 WP_000031783.1 elongation factor Tu -
  IN859_RS03555 (IN859_03555) fusA 707515..709629 (-) 2115 WP_000124700.1 elongation factor G -
  IN859_RS03560 (IN859_03560) rpsG 709726..710196 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=437982 IN859_RS03535 WP_000339836.1 704870..705337(+) (pilD) [Escherichia coli strain BS15R-A]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=437982 IN859_RS03535 WP_000339836.1 704870..705337(+) (pilD) [Escherichia coli strain BS15R-A]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361