Detailed information NTG0437799

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IM723_RS09400
• Genome accession: NZ_CP063275
• Coordinates: 1816016..1817284 (-)
• Length: 422 a.a.
• NCBI ID: WP_002952183.1
• Uniprot ID: Q5M295
• Organism: Streptococcus thermophilus strain DMST-H2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1811016..1822284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM723_RS09370	-	1811320..1812861 (+)	1542	WP_002948651.1	ABC transporter ATP-binding protein	-
IM723_RS10355	-	1812994..1813209 (+)	216	WP_041827116.1	hypothetical protein	-
IM723_RS09375	-	1813255..1814232 (+)	978	WP_011226670.1	replication initiation protein	-
IM723_RS09380	-	1814244..1814432 (+)	189	WP_000369785.1	DUF3173 domain-containing protein	-
IM723_RS09385	-	1814434..1815573 (+)	1140	WP_011226671.1	site-specific integrase	-
IM723_RS09400	rarA	1816016..1817284 (-)	1269	WP_002952183.1	replication-associated recombination protein A	Machinery gene
IM723_RS09405	rpmB	1817454..1817642 (+)	189	WP_002952184.1	50S ribosomal protein L28	-
IM723_RS09410	-	1817769..1818035 (+)	267	WP_002952186.1	IreB family regulatory phosphoprotein	-
IM723_RS09415	ruvX	1818035..1818454 (+)	420	WP_002952187.1	Holliday junction resolvase RuvX	-
IM723_RS09420	-	1818563..1818868 (+)	306	WP_002952188.1	DUF1292 domain-containing protein	-
IM723_RS09425	-	1819081..1820727 (+)	1647	Protein_1806	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46419.92 Da
• Isoelectric Point: 6.8977

>NTDB_id=437799 IM723_RS09400 WP_002952183.1 1816016..1817284(-) (rarA) [Streptococcus thermophilus strain DMST-H2]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=437799 IM723_RS09400 WP_002952183.1 1816016..1817284(-) (rarA) [Streptococcus thermophilus strain DMST-H2]
ATGCCAGATAATCTTGCTTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAGCATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTTTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TGACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGGCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

3D structure

• AlphaFold DB: Q5M295

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.666	99.289	0.592