Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INR48_RS19980 Genome accession   NZ_CP063153
Coordinates   4168546..4169013 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain M7424     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4163546..4174013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR48_RS19935 (INR48_19940) rplP 4163656..4164066 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  INR48_RS19940 (INR48_19945) rpsC 4164079..4164780 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  INR48_RS19945 (INR48_19950) rplV 4164798..4165130 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  INR48_RS19950 (INR48_19955) rpsS 4165145..4165423 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  INR48_RS19955 (INR48_19960) rplB 4165440..4166261 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  INR48_RS19960 (INR48_19965) rplW 4166279..4166581 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  INR48_RS19965 (INR48_19970) rplD 4166578..4167183 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  INR48_RS19970 (INR48_19975) rplC 4167194..4167823 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  INR48_RS19975 (INR48_19980) rpsJ 4167856..4168167 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  INR48_RS19980 (INR48_19985) pilD 4168546..4169013 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  INR48_RS19985 (INR48_19990) bfr 4169010..4169486 (-) 477 WP_000675515.1 bacterioferritin -
  INR48_RS19990 (INR48_19995) bfd 4169559..4169753 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  INR48_RS19995 (INR48_20000) tuf 4169936..4171120 (-) 1185 WP_000031783.1 elongation factor Tu -
  INR48_RS20000 (INR48_20005) fusA 4171191..4173305 (-) 2115 WP_000124703.1 elongation factor G -
  INR48_RS20005 (INR48_20010) rpsG 4173402..4173872 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=437384 INR48_RS19980 WP_000338336.1 4168546..4169013(+) (pilD) [Escherichia coli strain M7424]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=437384 INR48_RS19980 WP_000338336.1 4168546..4169013(+) (pilD) [Escherichia coli strain M7424]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368