Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INP90_RS08880 Genome accession   NZ_CP063124
Coordinates   1810740..1812080 (-) Length   446 a.a.
NCBI ID   WP_197559555.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805740..1817080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS08860 (INP90_08860) potA 1806715..1807833 (+) 1119 WP_005698520.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  INP90_RS08865 (INP90_08865) potB 1807817..1808677 (+) 861 WP_005698572.1 spermidine/putrescine ABC transporter permease PotB -
  INP90_RS08870 (INP90_08870) potC 1808677..1809447 (+) 771 WP_005695832.1 spermidine/putrescine ABC transporter permease PotC -
  INP90_RS08875 (INP90_08875) - 1809580..1810665 (+) 1086 WP_197559554.1 extracellular solute-binding protein -
  INP90_RS08880 (INP90_08880) rarA 1810740..1812080 (-) 1341 WP_197559555.1 replication-associated recombination protein A Machinery gene
  INP90_RS08885 (INP90_08885) lolA 1812134..1812760 (-) 627 WP_197559556.1 outer membrane lipoprotein chaperone LolA -
  INP90_RS08890 (INP90_08890) - 1812797..1815586 (-) 2790 WP_197559557.1 DNA translocase FtsK -
  INP90_RS08895 (INP90_08895) lrp 1815589..1816068 (-) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50127.88 Da        Isoelectric Point: 6.5137

>NTDB_id=436956 INP90_RS08880 WP_197559555.1 1810740..1812080(-) (rarA) [Haemophilus parainfluenzae strain M1C113_1]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMASETENGKKLDRTLLQEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKAFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLQEQDKSASKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=436956 INP90_RS08880 WP_197559555.1 1810740..1812080(-) (rarA) [Haemophilus parainfluenzae strain M1C113_1]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCAGCCCGTATGCGTCCAACAAATTTGGAACA
ATATTATGGACAGACGCATTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCAATTCAAGCAGGGCATGTTCATTCTATGA
TTCTGTGGGGACCGCCGGGGACAGGTAAAACAACACTGGCGGAAATTATTGCTCATCGTATCAATGCAGAAGTTGAACGA
ATTTCAGCAGTAACAAGCGGTGTGAAAGAGATTCGAGAATCAATTGAGCGCGCGAAACAAAATCGACTTGCAGATCGCCA
AACCATTTTATTTGTGGATGAAGTGCATCGTTTTAACAAAAGCCAACAAGATGCATTTTTACCCCATATTGAAGATGGTA
CGATTATTTTTATTGGTGCCACAACGGAAAACCCTTCCTTTGAATTAAATAATGCCTTGCTTTCTCGTGCGAGAGTTTAT
CTACTGAAGTCATTGACAGTCGCTGAAATCGAACAAGTTCTGCAACAAGCCATTTCTGATCCAGAGCGAGGATTAGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTACAGGTATTAGCCGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAACT
GTCTTGAACTGATGGTAGATATGGCTTCTGAAACAGAAAACGGTAAAAAATTAGACCGCACTTTGTTGCAAGAAGTATTA
GGTGAACGACAAGCGCGTTTTGATAAACAAGGCGATCGTTTTTATGATTTGATTTCTGCTTTACATAAATCTATTCGAGG
CTCCGCAGCTGATGCTGCACTTTATTGGTATGCACGAATTATCACTGCAGGGGGCGATCCTCTTTATGTTGCACGACGTT
TATTAGCAATTGCTTCGGAAGATGTGGGCAATGCTGATCCAAGAGCAATGCAAGTAGCTCTCGCAGCTTGGGATTGTTTT
ACGAGAGTGGGCGCCTATGAAGGAGAACGGGCTATTGCTCAAGCTATTATTTATTTAGCTGTAGCACCGAAGAGTAATGC
GGTTTACAACGCATTTAATGCTGCCAAACAGCATGCGAAAGCGTTTCCAGATTTTGATGTGCCACCTCATTTACGTAATG
CACCAACGGCTTTAATGAAAGAATTAGGCTATGGCGCTGAATATCGTTATGCACATGATGAGCCAAATGCTTATGCCGCA
GGAGAAAATTACTTTCCACCGGAACTGAAAGATACCCAGTATTATTTCCCAACTAATCGAGGGATGGAAATTCAAATTAA
AGAAAAACTTGAACGTTTACAAGAGCAAGATAAAAGCGCATCAAAAAAACGTTATAAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.376

95.516

0.386