Detailed information NTG0436833

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: INP92_RS08245
• Genome accession: NZ_CP063122
• Coordinates: 1704826..1706166 (-)
• Length: 446 a.a.
• NCBI ID: WP_197554023.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C125_4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1699826..1711166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP92_RS08225 (INP92_08220)	potA	1700802..1701920 (+)	1119	WP_193451135.1	spermidine/putrescine ABC transporter ATP-binding protein PotA	-
INP92_RS08230 (INP92_08225)	potB	1701904..1702764 (+)	861	WP_005695833.1	spermidine/putrescine ABC transporter permease PotB	-
INP92_RS08235 (INP92_08230)	potC	1702764..1703534 (+)	771	WP_005695832.1	spermidine/putrescine ABC transporter permease PotC	-
INP92_RS08240 (INP92_08235)	-	1703669..1704751 (+)	1083	WP_005698550.1	extracellular solute-binding protein	-
INP92_RS08245 (INP92_08240)	rarA	1704826..1706166 (-)	1341	WP_197554023.1	replication-associated recombination protein A	Machinery gene
INP92_RS08250 (INP92_08245)	lolA	1706220..1706846 (-)	627	WP_197544673.1	outer membrane lipoprotein chaperone LolA	-
INP92_RS08255 (INP92_08250)	-	1706883..1709672 (-)	2790	WP_197554026.1	DNA translocase FtsK	-
INP92_RS08260 (INP92_08255)	lrp	1709675..1710154 (-)	480	WP_005695827.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50150.96 Da
• Isoelectric Point: 6.6709

>NTDB_id=436833 INP92_RS08245 WP_197554023.1 1704826..1706166(-) (rarA) [Haemophilus parainfluenzae strain M1C125_4]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMAPETENGKKLDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKAFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLQEQDKNASKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=436833 INP92_RS08245 WP_197554023.1 1704826..1706166(-) (rarA) [Haemophilus parainfluenzae strain M1C125_4]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCTGCCCGTATGCGTCCAACTAATTTGGAGCA
ATATTATGGGCAGACGCATTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCAATTCAAGCAGGGCATGTTCATTCTATGA
TTCTGTGGGGGCCGCCGGGTACAGGTAAAACAACACTGGCGGAAATTATTGCTCATCGTATCAATGCAGAAGTTGAACGA
ATTTCCGCGGTAACAAGCGGCGTGAAAGAAATTCGAGAATCAATTGAGCGAGCGAAACAAAATCGACTTGCAGATCGCCA
AACCATTTTATTTGTGGATGAAGTGCATCGTTTTAACAAAAGCCAACAAGATGCATTTTTACCCCATATTGAAGATGGGA
CGATTATTTTTATTGGCGCCACAACAGAAAATCCTTCCTTTGAATTAAATAATGCCTTACTTTCTCGTGCGAGAGTTTAT
CTCCTTAAGTCATTGACAGTGGCTGAAATCGAACAAGTTCTACAACAGGCGATTTCTGATCCTGAGCGAGGATTAGGTAA
AGAGCGGTTAGTTTTAGAAGAGAATTTACTACAGGTATTAGCCGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAATT
GTCTTGAGCTGATGGTGGATATGGCTCCTGAAACAGAAAACGGTAAGAAATTAGACCGCACTTTGTTAAAAGAAGTATTA
GGAGAACGACAAGCGCGTTTCGATAAACAAGGCGATCGTTTTTATGATTTGATTTCCGCTTTGCATAAATCTATTCGAGG
CTCAGCAGCCGATGCGGCACTTTATTGGTATGCACGAATTATTACCGCTGGAGGCGATCCTCTTTATGTTGCAAGACGTT
TATTAGCGATAGCCTCAGAAGATGTGGGTAATGCTGATCCAAGAGCAATGCAAGTAGCTCTCGCAGCTTGGGATTGTTTT
ACGAGAGTGGGCGCCTATGAAGGAGAGCGAGCTATTGCACAAGCCATTATTTATTTAGCCGTAGCACCGAAGAGTAATGC
GGTTTACAACGCATTTAATGCTGCCAAACAGCATGCGAAAGCGTTTCCTGATTTTGATGTACCGCCTCATTTACGTAATG
CGCCAACGGCTTTAATGAAAGAATTAGGCTATGGTGCTGAATATCGTTATGCACATGATGAGCCAAATGCTTATGCTGCA
GGGGAAAATTACTTCCCACCGGAACTGAAAGATACCCAGTATTATTTCCCAACTAACCGTGGTATGGAAATTCAAATTAA
AGAAAAGCTTGAGCGCTTACAAGAACAAGATAAAAACGCGTCAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (187-266)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.376	95.516	0.386