Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INP95_RS08565 Genome accession   NZ_CP063117
Coordinates   1770166..1771506 (-) Length   446 a.a.
NCBI ID   WP_197560527.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765166..1776506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS08545 (INP95_08540) potA 1766142..1767260 (+) 1119 WP_005698520.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  INP95_RS08550 (INP95_08545) potB 1767244..1768104 (+) 861 WP_005695833.1 spermidine/putrescine ABC transporter permease PotB -
  INP95_RS08555 (INP95_08550) potC 1768104..1768874 (+) 771 WP_005695832.1 spermidine/putrescine ABC transporter permease PotC -
  INP95_RS08560 (INP95_08555) - 1769009..1770091 (+) 1083 WP_178164277.1 extracellular solute-binding protein -
  INP95_RS08565 (INP95_08560) rarA 1770166..1771506 (-) 1341 WP_197560527.1 replication-associated recombination protein A Machinery gene
  INP95_RS08570 (INP95_08565) lolA 1771560..1772186 (-) 627 WP_049362704.1 outer membrane lipoprotein chaperone LolA -
  INP95_RS08575 (INP95_08570) - 1772223..1775012 (-) 2790 WP_197560528.1 DNA translocase FtsK -
  INP95_RS08580 (INP95_08575) lrp 1775015..1775494 (-) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50214.96 Da        Isoelectric Point: 6.5142

>NTDB_id=436648 INP95_RS08565 WP_197560527.1 1770166..1771506(-) (rarA) [Haemophilus parainfluenzae strain M1C142_1]
MSNLNFDFAENDFRPLAARMRPSNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMASETENGKKLDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSIRGSATDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKEFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLQEQDKNASKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=436648 INP95_RS08565 WP_197560527.1 1770166..1771506(-) (rarA) [Haemophilus parainfluenzae strain M1C142_1]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCTGCTCGTATGCGCCCAAGTAATTTAGAACA
ATATTATGGGCAGACGCACTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCGATTCAAGCAGGGCATGTTCATTCTATGA
TTCTGTGGGGACCGCCGGGGACAGGTAAAACAACACTAGCAGAAATTATTGCTCATCGTATCAATGCAGAAGTTGAACGA
ATTTCTGCAGTAACAAGCGGTGTGAAAGAGATTCGAGAATCAATTGAGCGCGCGAAACAAAATCGACTTGCAGATCGCCA
AACCATTTTATTTGTGGATGAAGTGCATCGCTTTAACAAAAGCCAACAAGATGCGTTTTTACCACATATTGAAGATGGTA
CGATTATTTTTATTGGTGCGACAACGGAAAATCCTTCCTTTGAATTAAATAATGCCTTGCTTTCTCGTGCGAGAGTTTAT
CTACTCAAGTCATTGACAGTGGCTGAAATCGAACAAGTTCTACAACAAGCGATTTCTGATCCTGAGCGAGGATTAGGTAA
AGAGCGGTTAGTTTTAGAAGAGAATTTGCTACAGGTTTTAGCTGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAATT
GTCTTGAACTGATGGTTGATATGGCTTCTGAAACTGAAAACGGTAAAAAATTAGACCGCACTTTGTTGAAAGAAGTATTA
GGTGAGAGACAAGCTCGTTTTGATAAACAAGGTGATCGCTTTTATGATTTGATTTCTGCTTTACATAAATCTATTCGAGG
CTCCGCAACAGATGCTGCGCTTTACTGGTATGCGCGAATTATCACTGCAGGCGGTGATCCTCTTTATGTTGCAAGACGTT
TATTAGCGATTGCATCAGAAGATGTGGGTAATGCTGATCCAAGAGCAATGCAAGTGGCACTAGCGGCTTGGGATTGTTTT
ACTAGAGTGGGCGCCTATGAAGGAGAACGGGCTATTGCTCAAGCCATTATTTATTTGGCCGTAGCGCCGAAAAGTAATGC
GGTTTACAACGCATTTAATGCAGCAAAACAACATGCAAAAGAGTTTCCTGACTTTGATGTACCGCCTCATTTACGTAATG
CGCCAACGGCTTTGATGAAAGAATTAGGCTATGGTGCTGAATATCGTTATGCACATGATGAACCTAATGCTTATGCTGCA
GGGGAAAATTATTTCCCACCAGAACTGAAAGATACGCAGTATTATTTCCCAACTAACCGTGGTATGGAAATTCAAATTAA
AGAAAAACTTGAACGTTTACAAGAGCAAGATAAAAACGCATCAAAAAAACGTTATAAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

AAA C-terminal domain (AAA_assoc_2)

(187-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.671

95.516

0.379