Detailed information NTG0436648

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: HF394_RS14955
• Genome accession: NZ_CP051177
• Coordinates: 3087394..3089856 (+)
• Length: 820 a.a.
• NCBI ID: WP_176294840.1
• Uniprot ID: -
• Organism: Planococcus glaciei strain CNCTC7660
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3082394..3094856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF394_RS14930 (HF394_14940)	-	3082580..3083866 (-)	1287	WP_036806358.1	replication-associated recombination protein A	-
HF394_RS14935 (HF394_14945)	-	3084000..3084416 (+)	417	WP_036806362.1	Rrf2 family transcriptional regulator	-
HF394_RS14940 (HF394_14950)	-	3084430..3085563 (+)	1134	WP_176294838.1	cysteine desulfurase family protein	-
HF394_RS14945 (HF394_14955)	mnmA	3085578..3086696 (+)	1119	WP_036806369.1	tRNA 2-thiouridine(34) synthase MnmA	-
HF394_RS14950 (HF394_14960)	-	3086712..3087371 (+)	660	WP_176294839.1	tetratricopeptide repeat protein	-
HF394_RS14955 (HF394_14965)	recD2	3087394..3089856 (+)	2463	WP_176294840.1	ATP-dependent RecD-like DNA helicase	Machinery gene
HF394_RS14960 (HF394_14970)	alaS	3090417..3093041 (+)	2625	WP_176295180.1	alanine--tRNA ligase	-
HF394_RS14965 (HF394_14975)	-	3093131..3093397 (+)	267	WP_036806381.1	IreB family regulatory phosphoprotein	-
HF394_RS14970 (HF394_14980)	ruvX	3093400..3093816 (+)	417	WP_036806384.1	Holliday junction resolvase RuvX	-
HF394_RS14975 (HF394_14985)	-	3093830..3094138 (+)	309	WP_036806386.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 820 a.a.
• Molecular weight: 91029.22 Da
• Isoelectric Point: 4.9715

>NTDB_id=436648 HF394_RS14955 WP_176294840.1 3087394..3089856(+) (recD2) [Planococcus glaciei strain CNCTC7660]
MTGQIDLFQEEVQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTSYPEKEIIVSGYFPKLSLEEQYRFTGAVKNHPKYGVQ
FQVETFTKEVPETEQGIVHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPEALDAVPRLSDDKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDVLTKNPYRLIEEIEGIGFQRADELGAKLGITGSHPDRIKASVLHLLNQAS
LSEGHVYLDAKTMIPMVKEMLESSQQEEIAIPMISKAMIELNEEGKVAGEETRLYLPSLYYSELGIATKLETLLSSQENR
DRFPASEVRKALGEAEERLGVNYAETQVQAIEQSINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKEEETEKDIEGRLIIIDEMSMVDTWLAHQLLKAIPEDAQIIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQTSGSSIIELAHQMKNGQLPADITAKTADRSFIKAGADQIPQVIEK
VVKSALAKGHSIRDVQVLAPMYKGPAGIDALNRMIQEMVNPNTDGKRKELVFGDVTYRIGDKILQLVNQPESNVFNGDMG
EVIAILKAKETVEKQDLLVASFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPQVFRYGVERTDDAQRMTTLKSRLQRSAAEPEEAEEAPVKASADVTAAQAPADAPAEKEPVGPVSLTAENA
HLIHPLIGMEGVKPTDFIEA

Nucleotide

• Length: 2463 bp

>NTDB_id=436648 HF394_RS14955 WP_176294840.1 3087394..3089856(+) (recD2) [Planococcus glaciei strain CNCTC7660]
ATGACCGGACAAATTGATTTATTCCAAGAAGAAGTGCAATTCGTGCTAGGCCGTCCTGTCGTCTCGATTTTTCACAATCC
CCAAAACTTATTTTCCATCGCCAAAGTGAAAATCCAAGAAACCAACACCTCCTATCCGGAAAAAGAAATTATCGTGTCGG
GCTATTTTCCGAAACTGTCGCTTGAGGAACAATACCGTTTTACGGGGGCTGTGAAAAATCATCCGAAATACGGCGTGCAG
TTCCAGGTCGAAACATTCACGAAAGAAGTGCCGGAAACCGAACAGGGCATTGTCCATTATTTATCGAGCGATATGTTCAA
CGGCATCGGCCGGAAAACGGCGGAAACGATCGTTAAAAAGCTCGGCAAAGACGCCATCAAAAAGATTCTGGAAGACCCGG
AAGCGCTCGATGCCGTGCCGCGTTTGTCGGACGACAAAAAAGACACCATCCGTTCGACGCTGCAAATGAACTTGGGGCTG
GAGCGGGTCATGATCCAATTGAACGACTGGGGATTCGGCCCGCAAGTCGGCATGCGCATTTACCAGGCGTACCGCGAAGA
AACAATCGATGTGCTGACGAAAAACCCGTACCGCTTGATTGAAGAAATCGAAGGGATCGGCTTCCAGCGCGCCGATGAGC
TCGGGGCAAAGCTCGGCATCACCGGCAGCCACCCGGACCGCATCAAGGCGTCGGTGCTGCATTTATTGAACCAGGCGTCC
TTGTCTGAAGGACACGTCTACCTGGATGCAAAAACGATGATCCCGATGGTGAAAGAAATGCTGGAATCGAGCCAGCAGGA
AGAAATTGCGATCCCGATGATTTCCAAAGCGATGATTGAACTGAATGAAGAAGGCAAAGTGGCGGGGGAAGAAACCCGGC
TTTATTTGCCGTCTTTGTATTACTCGGAACTCGGCATTGCGACCAAACTGGAAACCTTGCTGTCGTCGCAGGAAAACCGC
GACCGGTTCCCGGCGTCCGAAGTGCGGAAAGCGCTCGGCGAAGCGGAAGAGCGGCTCGGCGTCAATTATGCCGAAACACA
GGTCCAGGCCATTGAACAAAGCATCAACTCGTCCGTCATGATTCTGACAGGCGGCCCGGGGACCGGCAAGACGACGGTCG
TCCGCGGCCTGGTCGAAGTGTATGCGGAACTCCACGGCTTGTCGCTCGACCCGAAAGATTATGCCAAGAAAAAAGAGCCG
TTCCCGATCATTTTGGCGGCGCCGACCGGGCGAGCAGCCAAACGGCTCAGCGAATCGACGGAACTGCCGGCGATGACGAT
TCACCGCTTGCTCGGCTTTAACGGCCAGGAAAAAGAAGAAGAAACCGAAAAAGACATCGAAGGCCGCCTCATCATCATCG
ATGAAATGTCGATGGTCGATACGTGGCTCGCGCATCAATTGTTAAAAGCCATTCCGGAAGACGCCCAGATCATTTTTGTC
GGCGACCAGGACCAGCTGCCGCCGGTCGGGCCGGGCCAGGTGCTGCGCGACTTGTTGGAATCAAAACGCATTCCGACGGT
CGAACTGACCGACATTTACCGCCAGACATCCGGCTCGTCAATCATCGAACTCGCCCACCAAATGAAAAACGGCCAGCTGC
CAGCGGACATCACTGCGAAAACTGCGGACCGTTCGTTCATCAAAGCGGGCGCCGACCAGATTCCGCAAGTGATCGAAAAA
GTGGTCAAGAGCGCACTCGCAAAAGGGCATTCGATCCGGGACGTCCAAGTGCTCGCGCCGATGTACAAAGGGCCGGCCGG
CATCGATGCCTTAAACCGCATGATCCAGGAAATGGTCAATCCGAACACGGACGGCAAGCGGAAAGAGTTGGTGTTCGGCG
ATGTCACTTACCGCATCGGCGACAAGATCCTGCAGCTTGTCAACCAGCCCGAAAGCAACGTCTTCAACGGCGATATGGGC
GAAGTCATCGCCATCTTGAAGGCGAAAGAAACGGTGGAGAAACAGGACCTGCTCGTCGCGTCGTTCGACGGCATCGAAGT
GACGTATCAGCGCTCGGATTTGAACCAGCTGACGCTCGCATACTGCTGCTCGATCCACAAATCACAAGGTTCGGAATTCC
CGACGGTCATCATGCCGGTCGTCCGCGGTTACATGAAAATGCTGCGGCGCAACCTTCTGTACACCGGCATCACGCGCAGC
AAGGATTTTCTGATCCTGTGCGGCGACCCGCAAGTGTTCCGCTACGGCGTTGAACGGACCGATGATGCGCAGCGCATGAC
GACCTTGAAAAGCCGTCTGCAGCGATCGGCTGCTGAACCGGAAGAAGCAGAAGAAGCTCCAGTGAAAGCTTCAGCTGATG
TCACAGCGGCACAAGCGCCCGCTGATGCACCGGCGGAAAAAGAACCGGTCGGCCCAGTGAGCCTGACAGCTGAAAATGCC
CATCTGATCCATCCGCTGATCGGCATGGAAGGCGTCAAGCCGACTGATTTTATTGAAGCGTAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-652)

• AAA domain (AAA_30) (343-551)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	54.367	99.146	0.539