Detailed information NTG0436586

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: INP96_RS08295
• Genome accession: NZ_CP063116
• Coordinates: 1698625..1699965 (-)
• Length: 446 a.a.
• NCBI ID: WP_197555757.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C146_1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1693625..1704965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP96_RS08275 (INP96_08270)	potA	1694602..1695720 (+)	1119	WP_197555756.1	spermidine/putrescine ABC transporter ATP-binding protein PotA	-
INP96_RS08280 (INP96_08275)	potB	1695704..1696564 (+)	861	WP_005695833.1	spermidine/putrescine ABC transporter permease PotB	-
INP96_RS08285 (INP96_08280)	potC	1696564..1697334 (+)	771	WP_005695832.1	spermidine/putrescine ABC transporter permease PotC	-
INP96_RS08290 (INP96_08285)	-	1697468..1698550 (+)	1083	WP_005698550.1	extracellular solute-binding protein	-
INP96_RS08295 (INP96_08290)	rarA	1698625..1699965 (-)	1341	WP_197555757.1	replication-associated recombination protein A	Machinery gene
INP96_RS08300 (INP96_08295)	lolA	1700019..1700654 (-)	636	WP_197555758.1	outer membrane lipoprotein chaperone LolA	-
INP96_RS08305 (INP96_08300)	-	1700691..1703480 (-)	2790	WP_197555759.1	DNA translocase FtsK	-
INP96_RS08310 (INP96_08305)	lrp	1703483..1703962 (-)	480	WP_005695827.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50198.92 Da
• Isoelectric Point: 6.3602

>NTDB_id=436586 INP96_RS08295 WP_197555757.1 1698625..1699965(-) (rarA) [Haemophilus parainfluenzae strain M1C146_1]
MSNLNFDFAENDFRPLAARMRPSNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMASETENGKKLDRTLLQEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKEFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLQEQDKNASKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=436586 INP96_RS08295 WP_197555757.1 1698625..1699965(-) (rarA) [Haemophilus parainfluenzae strain M1C146_1]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCTGCTCGTATGCGCCCAAGTAATTTGGAACA
ATATTATGGGCAGACGCACTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCGATTCAAGCAGGGCATGTTCATTCTATGA
TTCTGTGGGGACCGCCGGGGACAGGTAAAACAACACTGGCGGAAATTATTGCTCATCGTATCAATGCAGAAGTTGAACGA
ATTTCAGCAGTAACAAGCGGTGTGAAAGAGATTCGAGAATCAATTGAGCGCGCGAAACAAAATCGACTTGCAGATCGCCA
AACCATTTTATTTGTGGATGAAGTGCATCGTTTTAACAAAAGCCAACAAGATGCATTTTTACCCCATATTGAAGATGGTA
CGATTATTTTTATTGGTGCCACAACGGAAAACCCTTCCTTTGAATTAAATAATGCCTTGCTTTCTCGTGCGAGAGTTTAT
CTACTGAAGTCATTGACAGTCGCTGAAATCGAACAAGTTCTGCAACAAGCCATTTCTGATCCAGAGCGAGGATTAGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTACAGGTATTAGCCGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAACT
GTCTTGAACTGATGGTAGATATGGCTTCTGAAACAGAAAACGGTAAAAAATTAGACCGCACTTTGTTGCAAGAAGTATTA
GGTGAACGACAAGCGCGTTTTGATAAACAAGGCGATCGTTTTTATGATTTGATTTCTGCTTTACATAAATCTATTCGAGG
CTCCGCAGCAGATGCAGCACTTTATTGGTATGCACGAATTATCACTGCAGGCGGCGATCCTCTTTATGTTGCACGACGTT
TATTAGCGATTGCCTCAGAAGATGTGGGCAATGCTGACCCAAGAGCAATGCAAGTTGCACTAGCGGCTTGGGATTGTTTT
ACGAGAGTGGGCGCTTATGAAGGAGAGCGAGCTATTGCTCAAGCCATTATTTATTTAGCGGTGGCTCCAAAGAGTAATGC
GGTTTACAACGCATTTAATGCGGCAAAACAACATGCAAAAGAGTTTCCTGATTTTGATGTACCGCCTCATTTACGTAATG
CCCCAACGGCTTTAATGAAAGAATTAGGCTATGGCGCTGAATATCGCTATGCACATGATGAGCCAAATGCTTATGCCGCA
GGGGAAAATTATTTCCCACCAGAACTGAAAGATACGCAGTATTATTTCCCAACTAACCGTGGTATGGAAATTCAAATTAA
AGAAAAACTTGAACGTTTACAAGAGCAAGATAAAAACGCATCAAAAAAACGCTATAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-266)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.906	95.516	0.381