Detailed information NTG0436500

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: HCG48_RS08025
• Genome accession: NZ_CP051167
• Coordinates: 1996574..1997686 (-)
• Length: 370 a.a.
• NCBI ID: WP_168568690.1
• Uniprot ID: -
• Organism: Oxynema aestuarii AP17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1991574..2002686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCG48_RS08005 (HCG48_08005)	-	1991646..1991924 (-)	279	WP_168568686.1	HU family DNA-binding protein	-
HCG48_RS08010 (HCG48_08010)	-	1992374..1994725 (-)	2352	WP_168568687.1	type IV pilus secretin family protein	-
HCG48_RS08015 (HCG48_08015)	-	1994907..1995734 (-)	828	WP_168568688.1	hypothetical protein	-
HCG48_RS08020 (HCG48_08020)	-	1995758..1996567 (-)	810	WP_168568689.1	PilN domain-containing protein	-
HCG48_RS08025 (HCG48_08025)	pilM	1996574..1997686 (-)	1113	WP_168568690.1	type IV pilus assembly protein PilM	Machinery gene
HCG48_RS08030 (HCG48_08030)	-	1998030..1998245 (+)	216	WP_168568691.1	hypothetical protein	-
HCG48_RS08035 (HCG48_08035)	-	1998324..1999616 (+)	1293	WP_168568692.1	sugar ABC transporter substrate-binding protein	-
HCG48_RS08040 (HCG48_08040)	-	1999700..2000962 (-)	1263	WP_168568693.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
HCG48_RS08045 (HCG48_08045)	-	2001045..2001737 (+)	693	WP_168568694.1	queuosine precursor transporter	-
HCG48_RS08050 (HCG48_08050)	-	2002008..2002517 (-)	510	WP_168568695.1	cupin domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 40385.24 Da
• Isoelectric Point: 4.1449

>NTDB_id=436500 HCG48_RS08025 WP_168568690.1 1996574..1997686(-) (pilM) [Oxynema aestuarii AP17]
MIQALKRLFSKGSSGIGVEIAPERINIVQLRPSGPGYKLEVYATAEVPEGVIQEGLIADPPELALLLHDTLAEHNIKPKS
VATAIPAREGTIRILPVPKDLLENAEEMREYMNQEAGLYLPFPREEADVDYQPLGEFTDEDGIDKVQVLLVATRKEVTDT
YLNTFQEAGLKIDVLDLTSFALLRTIRNQLLQLAPEEAVVIADLQFDSTEIAIVVDGIPQFSRTITIGMYQVQTALSQAM
NLPPSRNTDMLQGMNIPANPSEISGSGKMGGNNPGTQAMIKILSELADELRRSIDFYVNQSDGLEVSQLMLAGPGAAIGG
IDEFFNQRLSLLTTVIDPVENLALQVDEEQLPLLQRPGLGVVLGLAMRET

Nucleotide

• Length: 1113 bp

>NTDB_id=436500 HCG48_RS08025 WP_168568690.1 1996574..1997686(-) (pilM) [Oxynema aestuarii AP17]
GTGATTCAAGCCTTAAAACGTCTTTTTTCAAAAGGGTCTAGTGGCATCGGCGTGGAAATCGCCCCCGAACGGATTAATAT
CGTGCAACTACGCCCCTCCGGACCGGGATATAAATTGGAAGTTTACGCCACTGCCGAAGTCCCTGAAGGGGTGATTCAAG
AAGGGTTAATTGCCGACCCTCCCGAACTGGCGTTGCTCTTGCACGATACCCTCGCCGAACACAATATCAAGCCGAAAAGT
GTCGCGACAGCCATCCCCGCGAGAGAAGGAACGATCCGAATTTTACCCGTTCCTAAAGACTTGTTAGAAAACGCCGAAGA
AATGCGCGAATACATGAACCAAGAAGCGGGATTGTATTTGCCTTTCCCGAGAGAAGAAGCGGATGTAGACTATCAACCTC
TGGGGGAATTTACCGACGAAGATGGGATCGATAAAGTCCAAGTGCTGCTCGTCGCCACCCGCAAAGAAGTCACCGATACT
TATTTGAATACGTTTCAGGAAGCGGGTTTAAAAATCGACGTTCTCGACTTAACCAGTTTTGCCCTGCTGCGAACAATTCG
CAACCAACTGCTACAGTTAGCTCCAGAAGAAGCCGTCGTCATTGCCGACTTACAATTTGACAGCACGGAAATCGCGATCG
TCGTCGATGGTATCCCCCAATTTTCCCGCACGATTACGATCGGGATGTACCAAGTGCAGACCGCCTTATCTCAAGCGATG
AACCTACCGCCGTCGCGCAATACAGACATGCTCCAAGGTATGAACATTCCCGCCAACCCGTCAGAAATTTCCGGCTCGGG
TAAAATGGGGGGAAATAACCCCGGAACCCAGGCCATGATTAAAATTCTGTCCGAGCTGGCCGACGAACTGCGGCGGTCGA
TCGATTTTTATGTCAATCAGAGTGACGGGCTCGAAGTCTCGCAACTCATGCTCGCCGGACCGGGTGCCGCGATCGGTGGC
ATTGACGAATTTTTCAATCAACGATTGAGTTTGCTCACCACGGTCATCGATCCGGTAGAGAATCTCGCTTTACAAGTCGA
TGAAGAACAATTACCCCTGTTGCAGCGCCCGGGATTGGGAGTCGTGCTGGGGTTAGCCATGCGGGAGACCTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (284-369)

• Type IV pilus assembly protein PilM; (PilM_2) (17-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Synechocystis sp. PCC 6803	55.946	100	0.559