Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INP98_RS06500 Genome accession   NZ_CP063112
Coordinates   1333457..1334797 (+) Length   446 a.a.
NCBI ID   WP_197569664.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328457..1339797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS06485 (INP98_06475) lrp 1329469..1329948 (+) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -
  INP98_RS06490 (INP98_06480) - 1329951..1332740 (+) 2790 WP_197569663.1 DNA translocase FtsK -
  INP98_RS06495 (INP98_06485) lolA 1332777..1333403 (+) 627 WP_049371230.1 outer membrane lipoprotein chaperone LolA -
  INP98_RS06500 (INP98_06490) rarA 1333457..1334797 (+) 1341 WP_197569664.1 replication-associated recombination protein A Machinery gene
  INP98_RS06505 (INP98_06495) - 1334869..1335951 (-) 1083 WP_005698550.1 extracellular solute-binding protein -
  INP98_RS06510 (INP98_06500) potC 1336085..1336855 (-) 771 WP_049365949.1 spermidine/putrescine ABC transporter permease PotC -
  INP98_RS06515 (INP98_06505) potB 1336855..1337715 (-) 861 WP_049384975.1 spermidine/putrescine ABC transporter permease PotB -
  INP98_RS06520 (INP98_06510) potA 1337699..1338817 (-) 1119 WP_005698520.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50175.97 Da        Isoelectric Point: 6.7313

>NTDB_id=436462 INP98_RS06500 WP_197569664.1 1333457..1334797(+) (rarA) [Haemophilus parainfluenzae strain M1C149_1]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLSDRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMAPETENGKKLDRTLLKEAL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKAFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLHEQDKNSVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=436462 INP98_RS06500 WP_197569664.1 1333457..1334797(+) (rarA) [Haemophilus parainfluenzae strain M1C149_1]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGTCCTTTAGCAGCCCGTATGCGTCCAACAAATTTGGAACA
ATATTATGGGCAGACGCATTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCAATTCAAGCTGGGCATGTTCATTCTATGA
TTCTGTGGGGACCGCCGGGTACAGGTAAAACAACACTGGCGGAAATTATTGCTCATCGTATCAATGCAGAAGTTGAACGG
ATTTCAGCGGTAACAAGCGGCGTGAAAGAAATTCGAGAATCAATTGAGCGAGCTAAACAAAATCGACTTTCAGATCGCCA
AACGATTTTATTTGTGGATGAAGTGCATCGTTTTAACAAAAGCCAACAAGATGCGTTTTTGCCACATATTGAAGATGGTA
CGATTATTTTTATTGGTGCGACAACAGAAAATCCTTCCTTTGAATTAAATAATGCCTTACTTTCTCGTGCGAGAGTTTAT
CTACTCAAGTCATTGACCGTTGCTGAAATCGAACAAGTTCTACAACAGGCGATTTCTGATCCTGAGCGAGGATTAGGTAA
AGAGCGGTTAGTTTTAGAAGAGAATTTGCTACAGGTATTAGCCGAATATGTGAATGGTGATGCGCGCCTGGCTTTAAACT
GCCTTGAATTGATGGTGGACATGGCTCCTGAAACAGAAAACGGCAAAAAATTAGACCGCACTTTGTTGAAAGAAGCATTA
GGTGAACGACAAGCGCGTTTTGACAAGCAAGGCGATCGTTTTTATGATTTGATTTCTGCTTTACATAAATCCATTCGTGG
CTCAGCAGCCGATGCTGCACTTTATTGGTATGCACGAATTATCACTGCAGGAGGCGATCCACTTTATGTTGCACGACGTT
TATTAGCGATTGCCTCAGAAGATGTGGGCAATGCTGATCCTCGCGCAATGCAAGTGGCTCTCGCAGCTTGGGATTGTTTT
ACGAGAGTGGGAGCTTATGAAGGAGAGCGAGCCATTGCTCAAGCCATTATTTATTTGGCCGTAGCGCCGAAGAGTAATGC
GGTTTACAACGCATTTAATGCTGCCAAACAGCATGCGAAAGCGTTTCCTGATTTTGATGTGCCACCTCATTTACGTAATG
CGCCAACGGCTTTAATGAAAGAATTAGGCTATGGCGCTGAATATCGCTATGCACATGATGAGCCAAATGCTTATGCTGCA
GGAGAAAATTACTTTCCACCAGAACTGAAAGATACCCAGTATTATTTCCCAACTAATCGCGGGATGGAAATTCAAATTAA
AGAAAAGCTTGAGCGTTTACATGAACAAGATAAAAACTCCGTAAAGAAACGCTATAAATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(187-266)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.662

94.843

0.386