Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HF500_RS15395 Genome accession   NZ_CP051162
Coordinates   3032736..3035090 (-) Length   784 a.a.
NCBI ID   WP_063165179.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain CPW16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3027736..3040090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF500_RS15370 (HF500_15370) alaS 3027748..3030384 (-) 2637 WP_063165182.1 alanine--tRNA ligase -
  HF500_RS15375 (HF500_15375) - 3030701..3031762 (-) 1062 WP_063165181.1 AI-2E family transporter -
  HF500_RS15380 (HF500_15380) - 3031884..3032018 (-) 135 WP_081208394.1 YrzQ family protein -
  HF500_RS15385 (HF500_15385) - 3032030..3032221 (-) 192 WP_008881018.1 hypothetical protein -
  HF500_RS15390 (HF500_15390) - 3032237..3032710 (-) 474 WP_168368825.1 PRC-barrel domain-containing protein -
  HF500_RS15395 (HF500_15395) recD2 3032736..3035090 (-) 2355 WP_063165179.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HF500_RS15400 (HF500_15400) - 3035108..3035770 (-) 663 WP_168368826.1 tetratricopeptide repeat protein -
  HF500_RS15405 (HF500_15405) mnmA 3035878..3036993 (-) 1116 WP_063165177.1 tRNA 2-thiouridine(34) synthase MnmA -
  HF500_RS15410 (HF500_15410) - 3037008..3038150 (-) 1143 WP_168368827.1 cysteine desulfurase family protein -
  HF500_RS15415 (HF500_15415) - 3038173..3038589 (-) 417 WP_063165175.1 Rrf2 family transcriptional regulator -
  HF500_RS15420 (HF500_15420) - 3038600..3039250 (-) 651 WP_210436899.1 YitT family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 86087.54 Da        Isoelectric Point: 4.9494

>NTDB_id=436423 HF500_RS15395 WP_063165179.1 3032736..3035090(-) (recD2) [Geobacillus subterraneus strain CPW16]
MQEQQSLALDGRTFMKGTCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYVFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVEALGENAIATILRDPEALRRVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYQLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKEEELIGRMAELLGGRENGAVDGQAIGQTLLMLSEEGKMIMEQSRCYLPSLYFAEKGIASNIQRLLRQTPPS
AFAESEFLLALGALEERLGMQYAPQQKEAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALHGLSLDPADYKNDEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGVEGFSRDENEPIAGKLLVVDEVSMVDTWLANQLLKAVPDGMQVIFVG
DEDQLPSVGPGQVLKDLLESGVVPSVKLTEVYRQAEGSSIIELAHAMKRGVVPADLTAPKADRSFIRCRAGQVADVVRQI
ADNARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQGLFNPPADGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGEV
VAIFYAKENTEKQDLLVVSFDGVEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLILCGEEEAFRLGVAQRGDGARRTALAEKLAAASFVEGELPLEDANTGMENVTPYDFMGDEPS

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=436423 HF500_RS15395 WP_063165179.1 3032736..3035090(-) (recD2) [Geobacillus subterraneus strain CPW16]
TTGCAAGAGCAGCAATCGCTCGCGCTCGATGGACGCACGTTTATGAAAGGAACGTGTTTGGCCGTCATTTTCCATAACGA
AGAAACGTTATATACGGTCGTCCGCATCCGTGTCGAAGAAACAAATGAAGCGGCTGCGGAGGAGGAAGTGGTCGTCACCG
GTTATTTTCCTCGTTTAAATGAGGGGGACGTGTACGTTTTTTATGGGCAGTTCCGCCAGCATCCGCGCTTTGGCCGCCAA
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCAAACACGAAAGAAGGAGTTATCCATTATTTGTCAAGCGGCTTGTTTAA
AGGAATCGGAAAAAAGACGGCGGCAGCGATTGTGGAGGCGCTCGGCGAAAACGCGATCGCCACGATTTTGCGCGATCCGG
AGGCGCTTAGGCGCGTGCCGAAGCTGACGAAGCAAAAAGCGAAGCAATTGTATGAAACGCTTTGCGCCCACGAAGGGCTC
GAGCAGACGATGATCGCCCTCGCCCAGCTCGGCTTCGGTCCGCAGCTGGCGATGAAAATTTACCAAGTATACGGCGAAGA
GACGATGGACATCATTCATGAAAACCCGTACCAGCTCGTCGAAGACATTGAAGGGATCGGCTTTGGCCGCGCCGATGAGC
TTGGGCGGCAGCTCGGCATTTCCGGCAGCCACCCGGCCCGGCTGCGCGCCGCCTGCCTGTTTGTCCTTGAGCAGGCATGC
CTGCAAGAAGGGCACGTCTATATGAAAGAGGAAGAGCTCATCGGCCGCATGGCGGAGCTGCTTGGCGGAAGGGAAAACGG
AGCGGTCGATGGACAAGCCATCGGGCAGACGCTCCTCATGTTAAGCGAAGAAGGGAAGATGATCATGGAGCAAAGCCGCT
GTTATCTTCCCTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCAAACATTCAGCGGCTGCTTAGGCAAACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTTGCGCTCGGGGCGCTTGAGGAGCGGCTCGGGATGCAATACGCGCCCCAGCAAAA
AGAGGCAATCCAACAGGCCCTTTCTTCGCCGCTCTTTATTTTGACCGGCGGTCCGGGAACCGGAAAAACAACGGTCATTA
AAGGCATCGTCGAACTGTTTGCCGCCTTACACGGCCTGTCGCTCGACCCTGCCGATTACAAAAACGATGAACCGTTTCCC
GTGCTGCTCGCCGCTCCGACCGGACGGGCGGCAAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCAACGATTCACCG
GCTGCTTGGCTGGAATGGAGTGGAAGGATTCAGCCGCGATGAAAATGAGCCGATTGCCGGCAAGCTGCTTGTCGTCGATG
AAGTGTCGATGGTCGATACGTGGTTGGCCAATCAGCTGTTAAAAGCCGTGCCTGACGGAATGCAAGTCATCTTCGTTGGC
GACGAGGATCAGCTGCCATCGGTCGGCCCCGGGCAAGTGTTGAAAGATTTGCTTGAGTCGGGCGTCGTTCCATCGGTCAA
ACTGACCGAGGTGTACCGCCAAGCGGAAGGATCATCGATCATCGAGCTCGCCCATGCGATGAAGCGCGGCGTCGTGCCGG
CCGACTTGACCGCCCCGAAGGCGGATCGTTCGTTCATTCGTTGCCGCGCCGGACAAGTGGCTGATGTTGTGCGGCAAATT
GCTGACAACGCGCGCAACAAAGGGTTTTCCGTCAAGGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCGGCCGGCAT
CGATCAGCTGAACAAAGTGCTGCAGGGGCTGTTTAACCCGCCGGCTGACGGGAAACGGGAGCTTTCCGTCGGCGACGTTG
TGTACCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAAGACAATGTGTTTAACGGCGATATCGGCGAAGTC
GTTGCCATTTTTTACGCCAAAGAAAATACGGAAAAGCAAGACTTGCTTGTTGTCTCGTTTGACGGCGTTGAAGTGACATA
CACAAGGCAAGATTTAGCGCAAATTACCCATGCGTATTGCTGCTCGGTCCATAAAGCGCAAGGGAGCGAGTTTCCAATCG
TCATTTTGCCTGTTGTCAAAAGCTACTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAGCAG
TTTCTTATTTTATGCGGTGAGGAAGAAGCGTTCCGGTTGGGCGTTGCCCAACGCGGCGACGGAGCGCGCCGGACAGCGCT
CGCCGAAAAGTTGGCGGCTGCGTCGTTTGTTGAGGGGGAACTGCCGCTTGAGGATGCGAATACCGGGATGGAAAACGTTA
CGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

Helix-hairpin-helix domain (HHH_5)

(107-153)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.95

100

0.607