Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HF500_RS06415 Genome accession   NZ_CP051162
Coordinates   1270209..1272032 (+) Length   607 a.a.
NCBI ID   WP_063165578.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain CPW16     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1265209..1277032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF500_RS06395 (HF500_06395) - 1265547..1266215 (-) 669 WP_063165575.1 TerC family protein -
  HF500_RS06400 (HF500_06400) mecA 1266432..1267112 (+) 681 WP_063165576.1 adaptor protein MecA -
  HF500_RS06405 (HF500_06405) cls 1267209..1268717 (+) 1509 WP_063165577.1 cardiolipin synthase -
  HF500_RS06410 (HF500_06410) - 1268887..1270176 (+) 1290 WP_168368229.1 competence protein CoiA family protein -
  HF500_RS06415 (HF500_06415) pepF 1270209..1272032 (+) 1824 WP_063165578.1 oligoendopeptidase F Regulator
  HF500_RS06420 (HF500_06420) - 1272046..1272243 (-) 198 WP_063165579.1 hypothetical protein -
  HF500_RS06425 (HF500_06425) spxH 1272517..1273410 (-) 894 WP_168368230.1 ClpXP adapter protein SpxH -
  HF500_RS06430 (HF500_06430) - 1273403..1273816 (-) 414 WP_063165581.1 globin -
  HF500_RS06435 (HF500_06435) - 1273918..1274523 (-) 606 WP_063165582.1 lytic transglycosylase domain-containing protein -
  HF500_RS06440 (HF500_06440) - 1274520..1275109 (-) 590 Protein_1217 CYTH domain-containing protein -
  HF500_RS06445 (HF500_06445) - 1275244..1275621 (+) 378 WP_063165584.1 hypothetical protein -
  HF500_RS06450 (HF500_06450) - 1275747..1276385 (+) 639 WP_063165585.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70250.17 Da        Isoelectric Point: 5.0867

>NTDB_id=436408 HF500_RS06415 WP_063165578.1 1270209..1272032(+) (pepF) [Geobacillus subterraneus strain CPW16]
MVVEENKATKSLPSRSEIPVEETWRLEDIFPTDDAWEQEFQQVKAMIPKISEYKGRLGESPEVMYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNAFYQGINDRAKSLYSEASSAMAFIVPEILDIDEAVLRSFLEQYEPLRLYQHALDEITRQRPHVLS
AEEEALLAQAAEVMQATSSTFSALNNADLTFPTIRDENGDEVEVTHGRFIRFLESTDRRVRRDAFHAVYHTYEKFQNTFA
NTLAGTVKKDNFFARVRRYSSAREAALDANKIPESVYDNLIATIHEHLPLLHRYVRLRKNVLGLDELHMYDLYTPLVQDV
KMEVTYGEAKQYMLDGLAPLGEEYVAIIKEGLENRWVDVRENRGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDHLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQEGEALTAKTLTSLYYDLNKKYFGEDMVVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMERLLGK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=436408 HF500_RS06415 WP_063165578.1 1270209..1272032(+) (pepF) [Geobacillus subterraneus strain CPW16]
ATAGTGGTGGAAGAGAACAAGGCAACGAAATCGCTTCCGTCCCGGAGCGAAATCCCTGTCGAGGAAACGTGGCGGCTCGA
GGACATTTTCCCGACCGATGACGCTTGGGAACAGGAGTTTCAGCAAGTGAAGGCGATGATTCCGAAGATCAGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGATGTATGAAGCGCTGCAATACCAAGATGAAGTGTCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGACACGACGAACGCGTTTTACCAAGGGATCAACGACCGGGCGAAAAG
CTTGTACAGCGAAGCGTCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGACATTGATGAAGCGGTGTTGCGTTCGT
TTTTGGAGCAATACGAACCGCTCAGGCTGTATCAACACGCGCTAGATGAAATTACGCGCCAGCGCCCGCACGTCTTGTCA
GCTGAAGAAGAAGCGCTGCTGGCACAGGCGGCTGAGGTCATGCAGGCGACATCATCGACATTCAGTGCGTTAAACAACGC
TGACTTAACGTTCCCGACGATCCGCGACGAAAATGGGGATGAGGTGGAAGTGACGCACGGCCGGTTTATCCGCTTTTTGG
AAAGCACCGACCGCCGCGTCCGCCGCGATGCGTTTCATGCGGTATACCATACGTACGAGAAGTTTCAGAATACGTTTGCC
AACACGCTTGCGGGCACGGTGAAAAAAGACAACTTTTTCGCCCGTGTCCGCCGCTACAGCTCAGCGCGGGAAGCGGCATT
GGATGCGAACAAGATTCCAGAGAGCGTCTATGATAATTTGATTGCCACGATTCACGAGCACTTGCCGTTGTTGCACCGGT
ATGTGCGGCTGCGCAAAAACGTGCTTGGGCTCGACGAACTGCATATGTACGACTTATACACCCCGCTCGTGCAAGATGTA
AAAATGGAAGTGACCTACGGCGAAGCGAAGCAATATATGCTTGACGGGCTGGCGCCGCTTGGCGAGGAATATGTAGCAAT
CATCAAGGAAGGGCTTGAGAACCGTTGGGTCGATGTGCGCGAAAATAGAGGAAAGCGAAGCGGAGCCTATTCATCAGGGG
CGTACGGCACGCATCCGTACATTTTGCTGAACTGGCAAGACAACGTAAACAACTTATTTACGCTCGTGCATGAGTTCGGT
CACTCGGTCCATAGCTACTATACGCGCAAAACACAGCCGTATCCGTACGCCCATTATTCGATTTTTGTTGCTGAAGTGGC
GTCGACATGCAATGAGGCGCTGTTGAACGATCATTTGTTGAAAACGATCGATGATGAGAAAAAACGGCTATACTTGTTGA
ACCATTATCTTGAAGGGTTCCGCGGCACCGTCTTCCGGCAGACGATGTTTGCCGAGTTCGAGCATTTGATCCATCTGAAA
GCGCAGGAGGGGGAAGCGCTGACGGCAAAGACGCTCACGTCGCTCTATTATGACTTGAACAAAAAGTATTTCGGCGAGGA
TATGGTGGTTGATGAAGAAATTGGCCTTGAATGGGCGCGCATCCCGCATTTTTATTACAACTATTACGTGTATCAGTATG
CGACCGGCTTCAGTGCAGCGACGGCGCTCAGCAAGCAGATTTTAGAGGAAGGCGAGCCGGCGGTGAAACGGTATATCGAC
TTTTTAAAAGCCGGCAGCTCCGATTATCCGATCGAGGTGTTGAAAAAAGCGGGCGTCGATATGACAAGCGCCGAACCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAATTGGAAGAAATGGAACGCTTGCTTGGAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.505

97.858

0.494