Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INP99_RS06460 Genome accession   NZ_CP063111
Coordinates   1319146..1320486 (+) Length   446 a.a.
NCBI ID   WP_197541905.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1314146..1325486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS06445 (INP99_06435) lrp 1315158..1315637 (+) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -
  INP99_RS06450 (INP99_06440) - 1315640..1318429 (+) 2790 WP_197541903.1 DNA translocase FtsK -
  INP99_RS06455 (INP99_06445) lolA 1318466..1319092 (+) 627 WP_197541904.1 outer membrane lipoprotein chaperone LolA -
  INP99_RS06460 (INP99_06450) rarA 1319146..1320486 (+) 1341 WP_197541905.1 replication-associated recombination protein A Machinery gene
  INP99_RS06465 (INP99_06455) - 1320561..1321643 (-) 1083 WP_197541906.1 extracellular solute-binding protein -
  INP99_RS06470 (INP99_06460) potC 1321778..1322548 (-) 771 WP_054419951.1 spermidine/putrescine ABC transporter permease PotC -
  INP99_RS06475 (INP99_06465) potB 1322548..1323408 (-) 861 WP_005695833.1 spermidine/putrescine ABC transporter permease PotB -
  INP99_RS06480 (INP99_06470) potA 1323392..1324510 (-) 1119 WP_197542903.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50160.87 Da        Isoelectric Point: 6.5138

>NTDB_id=436401 INP99_RS06460 WP_197541905.1 1319146..1320486(+) (rarA) [Haemophilus parainfluenzae strain M1C152_1]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEIIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMASETENGKKLDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKDFPDFDVPSHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLDRLQEQDKNASKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=436401 INP99_RS06460 WP_197541905.1 1319146..1320486(+) (rarA) [Haemophilus parainfluenzae strain M1C152_1]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCAGCCCGTATGCGTCCAACAAATTTGGAACA
ATATTATGGACAGACGCATTTAATTGGGGAAGGAAAGCCGCTTCGTAAAGCAATTCAAGCAGGGCATGTTCATTCTATGA
TTTTGTGGGGACCGCCGGGAACAGGTAAAACAACGCTGGCGGAAATTATTGCTCATCGTATCAATGCAGAAGTTGAACGG
ATTTCAGCGGTAACAAGTGGCGTGAAAGAAATTCGAGAATCAATTGAGCGCGCGAAACAAAATCGACTTGCAGATCGCCA
AACGATTTTATTTGTGGATGAAGTGCATCGCTTTAACAAAAGCCAACAAGATGCGTTTTTACCCCATATTGAAGATGGGA
CGATTATTTTTATTGGTGCGACAACGGAAAATCCTTCCTTTGAATTAAATAATGCATTGCTTTCTCGTGCGAGAGTTTAT
CTACTCAAGTCATTGACAGTGGCTGAAATCGAACAAGTTCTACAACAAGCGATTTCTGATCCTGAGCGAGGATTAGGTAA
AGAGCGGTTAGTTTTAGAAGAGAATTTGCTACAGGTTTTAGCTGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAATT
GTCTTGAACTGATGGTTGATATGGCTTCTGAAACTGAAAACGGTAAAAAATTAGACCGCACTTTGTTGAAAGAAGTATTA
GGTGAGAGACAAGCTCGTTTTGATAAACAAGGTGATCGCTTTTATGATTTGATTTCTGCTTTACATAAATCTATTCGAGG
CTCCGCAGCAGATGCTGCGCTTTACTGGTATGCGCGAATTATCACGGCAGGCGGTGATCCTCTTTATGTTGCAAGACGTT
TATTAGCGATAGCTTCAGAAGATGTGGGTAATGCCGATCCTCGTGCAATGCAAGTGGCTCTAGCGGCTTGGGATTGTTTT
ACGAGAGTGGGCGCTTATGAAGGAGAGCGAGCCATCGCACAAGCCATTATTTATTTGGCCGTAGCGCCGAAGAGTAATGC
AGTTTATAACGCATTTAATGCAGCCAAACAACATGCAAAAGATTTTCCTGATTTCGATGTGCCATCTCATTTACGTAATG
CGCCAACGGCTTTAATGAAAGAATTAGGTTATGGCGCTGAATATCGTTATGCACATGATGAACCTAACGCTTATGCTGCT
GGAGAAAATTATTTCCCACCAGAACTGAAAGATACTCAGTATTATTTCCCAACTAATCGTGGTATGGAAATTCAAATTAA
AGAAAAGCTTGACCGTTTACAAGAGCAAGATAAAAACGCATCAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(187-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.376

95.516

0.386