Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INQ00_RS06490 Genome accession   NZ_CP063110
Coordinates   1319581..1320921 (+) Length   446 a.a.
NCBI ID   WP_197546554.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1314581..1325921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS06475 (INQ00_06480) lrp 1315593..1316072 (+) 480 WP_005695827.1 leucine-responsive transcriptional regulator Lrp -
  INQ00_RS06480 (INQ00_06485) - 1316075..1318864 (+) 2790 WP_197546552.1 DNA translocase FtsK -
  INQ00_RS06485 (INQ00_06490) lolA 1318901..1319527 (+) 627 WP_197546553.1 outer membrane lipoprotein chaperone LolA -
  INQ00_RS06490 (INQ00_06495) rarA 1319581..1320921 (+) 1341 WP_197546554.1 replication-associated recombination protein A Machinery gene
  INQ00_RS06495 (INQ00_06500) - 1320996..1322078 (-) 1083 WP_197546555.1 extracellular solute-binding protein -
  INQ00_RS06500 (INQ00_06505) potC 1322213..1322983 (-) 771 WP_054419951.1 spermidine/putrescine ABC transporter permease PotC -
  INQ00_RS06505 (INQ00_06510) potB 1322983..1323843 (-) 861 WP_049384975.1 spermidine/putrescine ABC transporter permease PotB -
  INQ00_RS06510 (INQ00_06515) potA 1323827..1324945 (-) 1119 WP_005698520.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50156.88 Da        Isoelectric Point: 6.5138

>NTDB_id=436340 INQ00_RS06490 WP_197546554.1 1319581..1320921(+) (rarA) [Haemophilus parainfluenzae strain M1C160_1]
MSNLNFDFAENDFRPLAARMRPTNLEQYYGQTHLIGEGKPLRKAIQAGHVHSMILWGPPGTGKTTLAEVIAHRINAEVER
ISAVTSGVKEIRESIERAKQNRLADRQTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARVY
LLKSLTVAEIEQVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMASETENGKKLDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSIRGSAADAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYNAFNAAKQHAKDFPDFDVPPHLRNAPTALMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLDRLQEQDKNASKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=436340 INQ00_RS06490 WP_197546554.1 1319581..1320921(+) (rarA) [Haemophilus parainfluenzae strain M1C160_1]
ATGTCTAATCTTAATTTTGATTTTGCTGAAAATGACTTTCGCCCTTTAGCAGCCCGTATGCGTCCAACAAATTTGGAACA
ATATTATGGACAGACGCATTTAATTGGGGAAGGAAAGCCTCTTCGTAAAGCAATTCAAGCAGGGCATGTTCATTCTATGA
TTTTGTGGGGACCGCCGGGTACAGGTAAAACAACACTGGCAGAAGTTATTGCTCATCGTATCAATGCAGAAGTTGAACGG
ATTTCAGCGGTAACAAGTGGCGTGAAAGAAATTCGAGAATCAATTGAGCGCGCGAAACAAAATCGACTTGCAGATCGCCA
AACGATTTTATTTGTGGATGAAGTGCATCGCTTTAACAAAAGCCAACAAGATGCGTTTTTACCCCATATCGAAGATGGTA
CGATTATTTTTATTGGTGCGACAACGGAAAATCCTTCCTTTGAATTAAATAATGCATTGCTTTCTCGTGCGAGAGTTTAT
CTACTCAAGTCATTGACAGTGGCTGAAATCGAACAAGTTCTACAACAAGCGATTTCTGATCCTGAGCGAGGATTAGGTAA
AGAGCGGTTAGTTTTAGAAGAGAATTTGCTACAGGTTTTAGCTGAATATGTGAATGGTGATGCTCGCCTGGCTTTAAACT
GCCTTGAATTGATGGTGGACATGGCTTCTGAAACTGAAAACGGTAAAAAATTAGACCGCACTTTGTTGAAAGAAGTATTA
GGTGAGAGACAAGCTCGTTTTGATAAACAAGGCGATCGCTTCTATGATTTGATTTCCGCTTTACATAAATCCATTCGAGG
CTCCGCAGCAGATGCTGCGCTTTACTGGTATGCGCGAATTATTACTGCAGGCGGTGATCCTCTTTATGTTGCAAGACGTT
TATTAGCGATTGCATCAGAAGATGTAGGAAATGCGGATCCTCGTGCAATGCAAGTGGCTCTAGCAGCTTGGGATTGTTTT
ACGAGAGTGGGCGCTTATGAAGGAGAGAGAGCCATTGCGCAAGCCATTATTTATTTGGCCGTAGCGCCGAAGAGTAATGC
GGTTTACAACGCATTTAATGCAGCCAAACAACATGCAAAAGATTTTCCTGATTTCGATGTGCCACCTCATTTACGTAATG
CGCCAACGGCTTTAATGAAAGAATTAGGTTATGGCGCTGAATATCGTTATGCACATGATGAACCTAATGCTTATGCTGCT
GGAGAAAATTATTTCCCACCGGAACTGAAAGATACGCAGTATTATTTCCCAACTAATCGTGGTATGGAAATTCAAATTAA
AGAAAAGCTTGACCGTTTACAAGAGCAAGATAAAAACGCATCAAAAAAGCGCTATAAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(187-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.376

95.516

0.386