Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IL983_RS19820 Genome accession   NZ_CP063047
Coordinates   4310013..4310438 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain KC-Tt-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4305013..4315438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL983_RS19805 (IL983_19805) pilX 4305577..4306164 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  IL983_RS19810 (IL983_19810) pilY1 4306176..4309667 (+) 3492 WP_015503654.1 type 4a pilus biogenesis protein PilY1 -
  IL983_RS19815 (IL983_19815) pilY2 4309669..4310016 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  IL983_RS19820 (IL983_19820) comF 4310013..4310438 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  IL983_RS19825 (IL983_19825) ispH 4310485..4311429 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IL983_RS19830 (IL983_19830) fkpB 4311515..4311955 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  IL983_RS19835 (IL983_19835) lspA 4311948..4312457 (-) 510 WP_003094728.1 signal peptidase II -
  IL983_RS19840 (IL983_19840) ileS 4312450..4315281 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=436252 IL983_RS19820 WP_003094721.1 4310013..4310438(+) (comF) [Pseudomonas aeruginosa strain KC-Tt-1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=436252 IL983_RS19820 WP_003094721.1 4310013..4310438(+) (comF) [Pseudomonas aeruginosa strain KC-Tt-1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383