Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HF520_RS01945 Genome accession   NZ_CP051144
Coordinates   392931..394787 (+) Length   618 a.a.
NCBI ID   WP_330586293.1    Uniprot ID   -
Organism   Romboutsia sp. CE17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 387931..399787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF520_RS01925 (HF520_01925) - 388145..388396 (+) 252 WP_168572425.1 TM1266 family iron-only hydrogenase system putative regulator -
  HF520_RS01930 (HF520_01930) hydG 388516..389967 (+) 1452 WP_330586292.1 [FeFe] hydrogenase H-cluster radical SAM maturase HydG -
  HF520_RS01935 (HF520_01935) - 390192..390695 (+) 504 WP_168572426.1 MarR family transcriptional regulator -
  HF520_RS01940 (HF520_01940) - 390683..392938 (+) 2256 WP_168572427.1 ABC transporter ATP-binding protein -
  HF520_RS01945 (HF520_01945) rcrQ 392931..394787 (+) 1857 WP_330586293.1 ABC transporter ATP-binding protein Regulator
  HF520_RS01950 (HF520_01950) - 395003..395689 (+) 687 WP_168572428.1 GntR family transcriptional regulator -
  HF520_RS01955 (HF520_01955) - 396201..397685 (+) 1485 WP_168572429.1 tagaturonate reductase -
  HF520_RS01960 (HF520_01960) - 397678..399165 (+) 1488 WP_168572430.1 altronate dehydratase family protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68746.80 Da        Isoelectric Point: 7.6793

>NTDB_id=436193 HF520_RS01945 WP_330586293.1 392931..394787(+) (rcrQ) [Romboutsia sp. CE17]
MSNERKSRQSMGGPMGRGPKMVGEKAKDFKGTMKTLLGYLGKFKTSIILVFIFAIGSVSFSVVGPKILGKATTKIFEGLV
AKVSGAAGAGIDFDSIGKILLTLIGLYILSAIFSFIQGFVMSGISQKIAYNLRNELSQKINRMPMKYFDSKTHGEVLSRI
TNDIDTLSQSLNQSMTQLITSVTTIIGVLVMMLSISWMMTGVTLLILPLSMILISFIIKRSQKYFKAQQEYLGHVNGQVE
ELYGGHNIVKVFNGEDEAIEKFNKLNDTLYQSAWKSQFLSGIMQPLMMFVGNLGYVVVAILGGWLAIRKTIEVGDIQSFI
QYVRNFTQPLSQVAQVTNLLQSTAAAAERVFEFLDEEEEDQVVENAVKVDGLEGKIDFEHVRFGYNPNKIIIKDFTAHVK
PGQKIAIVGPTGAGKTTIVKLLMRFYDVNSGTILIDNHNIKDFNRSELRQLFGMVLQDTWLFNGSIKDNIRYGKLDATDE
QVIEAAKAAHVHHFIKTLPDGYDMILNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLME
NRTSFIIAHRLSTIKNADLILVMNEGDIIEIGNHEKLLAQKGFYANLYNSQFEKDEAI

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=436193 HF520_RS01945 WP_330586293.1 392931..394787(+) (rcrQ) [Romboutsia sp. CE17]
ATGAGTAATGAACGAAAATCAAGACAAAGTATGGGAGGTCCAATGGGACGTGGACCTAAAATGGTAGGAGAAAAGGCTAA
AGATTTCAAGGGTACAATGAAGACGTTATTAGGGTATTTGGGTAAATTTAAAACATCTATAATTCTTGTTTTCATATTTG
CCATAGGAAGTGTTTCATTCTCTGTTGTAGGACCTAAAATATTAGGTAAAGCAACTACTAAAATATTTGAAGGGTTAGTT
GCAAAAGTTTCAGGGGCAGCTGGAGCTGGTATAGATTTTGATTCTATAGGAAAAATATTATTAACTTTAATAGGTTTATA
TATATTAAGTGCAATATTTTCATTTATACAAGGTTTTGTTATGAGTGGAATATCTCAAAAAATTGCCTATAATTTAAGAA
ATGAGTTATCACAAAAGATAAATAGAATGCCTATGAAGTACTTTGATAGTAAAACTCATGGTGAAGTATTATCTAGAATA
ACTAATGATATAGATACTCTTAGTCAAAGTTTAAACCAAAGTATGACTCAGCTTATAACATCTGTCACAACTATTATAGG
TGTTTTAGTAATGATGTTATCTATAAGCTGGATGATGACTGGTGTAACATTACTTATATTACCATTATCAATGATATTAA
TATCATTTATAATAAAGAGATCTCAAAAATACTTTAAAGCTCAACAGGAGTATTTAGGTCATGTAAATGGTCAAGTTGAG
GAGTTATATGGAGGACATAATATAGTTAAAGTATTTAATGGTGAAGATGAAGCTATAGAAAAATTTAATAAATTAAATGA
TACTTTATATCAATCAGCTTGGAAATCACAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTGTTGGTAACTTAG
GTTATGTAGTAGTTGCAATACTTGGTGGATGGTTAGCTATAAGAAAAACTATAGAAGTTGGAGATATACAATCATTTATA
CAATATGTAAGAAACTTTACTCAACCTTTATCTCAAGTGGCTCAAGTAACTAACTTATTACAATCTACAGCAGCTGCAGC
AGAAAGAGTATTTGAATTCTTAGACGAAGAAGAAGAAGATCAAGTAGTTGAAAATGCAGTCAAAGTTGATGGTTTAGAAG
GTAAAATTGATTTTGAGCATGTAAGATTTGGATATAATCCTAATAAAATAATAATAAAAGACTTTACTGCTCATGTTAAG
CCAGGACAAAAAATAGCTATAGTAGGTCCTACAGGAGCAGGTAAAACAACTATAGTAAAACTTCTTATGAGATTTTATGA
TGTTAACTCAGGTACGATACTTATTGACAATCATAATATAAAAGATTTTAATAGAAGTGAATTGAGACAATTATTTGGAA
TGGTTCTTCAAGATACATGGCTATTTAATGGAAGCATAAAAGATAATATTAGATATGGAAAGCTTGATGCAACTGATGAA
CAGGTAATAGAGGCAGCTAAAGCGGCACATGTACACCATTTTATAAAAACATTACCAGATGGATATGATATGATTCTTAA
TGAAGAAGCAAGTAACGTATCTCAAGGTCAAAAACAATTATTGACAATTGCTCGTGCAATACTAGCAGATCCTAAGATAT
TAATATTAGATGAAGCTACAAGTTCAGTTGATACAAGAACAGAAGTATTAATTCAAAAGGCTATGGATAACCTTATGGAA
AATAGAACAAGCTTCATAATTGCGCATAGATTATCTACTATAAAAAATGCAGATTTAATATTAGTAATGAACGAAGGGGA
TATAATAGAAATAGGTAATCATGAAAAGTTATTAGCTCAAAAAGGATTCTATGCTAATTTATATAACTCTCAATTTGAAA
AAGATGAAGCTATATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.041

95.146

0.495