Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HEQ83_RS08125 Genome accession   NZ_CP051011
Coordinates   1614053..1614832 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BY6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609053..1619832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ83_RS08105 trmFO 1609740..1611047 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HEQ83_RS08110 xerC 1611117..1612034 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  HEQ83_RS08115 hslV 1612050..1612595 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HEQ83_RS08120 hslU 1612612..1614015 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  HEQ83_RS08125 codY 1614053..1614832 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HEQ83_RS08130 flgB 1615186..1615575 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HEQ83_RS08135 flgC 1615575..1616027 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HEQ83_RS08140 fliE 1616038..1616358 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HEQ83_RS08145 fliF 1616401..1618011 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  HEQ83_RS08150 fliG 1618024..1619040 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HEQ83_RS08155 fliH 1619033..1619788 (+) 756 WP_060386938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=436003 HEQ83_RS08125 WP_003154263.1 1614053..1614832(+) (codY) [Bacillus velezensis strain BY6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=436003 HEQ83_RS08125 WP_003154263.1 1614053..1614832(+) (codY) [Bacillus velezensis strain BY6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471