Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   IL989_RS12915 Genome accession   NZ_CP062984
Coordinates   2634968..2637325 (-) Length   785 a.a.
NCBI ID   WP_193350517.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2629968..2642325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS12890 (IL989_12890) - 2630471..2631250 (-) 780 WP_013353107.1 enoyl-CoA hydratase -
  IL989_RS12895 (IL989_12895) - 2631264..2631848 (-) 585 WP_014470798.1 TetR/AcrR family transcriptional regulator -
  IL989_RS12900 (IL989_12900) - 2631937..2633625 (-) 1689 WP_193350516.1 AMP-binding protein -
  IL989_RS12905 (IL989_12905) - 2633731..2634408 (+) 678 WP_041481662.1 DUF2711 family protein -
  IL989_RS12910 (IL989_12910) - 2634547..2634951 (-) 405 WP_003152541.1 DUF350 domain-containing protein -
  IL989_RS12915 (IL989_12915) mutS/mutS2 2634968..2637325 (-) 2358 WP_193350517.1 endonuclease MutS2 Machinery gene
  IL989_RS12920 (IL989_12920) polX 2637346..2639058 (-) 1713 WP_193350518.1 DNA polymerase/3'-5' exonuclease PolX -
  IL989_RS12925 (IL989_12925) - 2639164..2639697 (-) 534 WP_045510031.1 CvpA family protein -
  IL989_RS12930 (IL989_12930) zapA 2639705..2639962 (-) 258 WP_003152533.1 cell division protein ZapA -
  IL989_RS12935 (IL989_12935) rnhC 2640096..2641037 (+) 942 WP_193350519.1 ribonuclease HIII -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87385.73 Da        Isoelectric Point: 6.3218

>NTDB_id=435977 IL989_RS12915 WP_193350517.1 2634968..2637325(-) (mutS/mutS2) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MQQKVLSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADIQKQLDEVEEASAIMRLRGHAPFGGLTDIRSALRRAEI
GSVLTPAEFTELSGLLYAVKQMKHFISQMTEDGVSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQ
LRTLESRVRDRLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA
KVKEKQEIERILRMLTEHTAEHTQEIVQNVEVLQTLDFIFAKARYAKAMKATKPFMNGDGFIRLKKARHPLLPQDQVVAN
DIELGGDYTTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDHVFADIGDEQSIEQSLSTFSSHMVNIV
SILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARVLATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYK
LLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDLMIASLEKSKKRADEELSETESIRKEAEKLHKELQQQIIE
LNAQKDTLMEEAEQKAAEKLEDAAKEAEQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELK
PGDEVKVLTFGQKGALLEKTGEKEWNVQIGILKMKVKEKDLEFLKSAPEPKKEKAITAVKGKDYHVSLELDLRGERYENA
LSRVEKYLDDAVLAGYPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=435977 IL989_RS12915 WP_193350517.1 2634968..2637325(-) (mutS/mutS2) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCACATGCCGCCTCATCGCTCGG
CCGGGAAAAGCTTCTGCAGCTGAAGCCTTTGACCGATCTCGCCGACATCCAAAAACAGCTGGATGAAGTCGAAGAAGCAT
CTGCCATCATGCGCTTAAGAGGCCATGCTCCGTTCGGCGGTCTGACCGATATAAGATCGGCTTTGCGTCGGGCGGAAATC
GGCAGCGTGCTGACCCCGGCGGAATTCACCGAATTGTCCGGGCTGCTGTATGCCGTTAAGCAAATGAAGCACTTTATCAG
TCAAATGACAGAAGACGGCGTCAGCATTCCGCTGATCCAGGCCCATGCAGAAGAGCTGATTACATTGGGCGATTTGGAAA
GGGAGATTAATTCCTGTATTGATGATCACGGCGAAGTGCTTGATCATGCATCTCCCGCTTTAAGAGGAATCCGCACGCAG
CTCAGAACGCTTGAATCAAGAGTGAGAGACCGGCTTGAATCGATGCTGCGTTCATCTTCCGCTTCAAAAATGCTGTCTGA
CACGATCGTTACGATTCGGAATGACCGCTTTGTCATTCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGGATCGTGC
ATGATACTTCTTCATCAGGTGCGACGCTGTTTATTGAACCGCAGGCGATCGTCGATATGAACAACTCGCTTCAGCAGGCG
AAGGTGAAAGAAAAACAGGAAATCGAACGGATTCTCCGGATGCTGACGGAGCATACGGCTGAACACACACAAGAGATTGT
TCAAAATGTGGAAGTGCTGCAGACACTGGATTTCATTTTCGCAAAAGCGAGATATGCAAAAGCGATGAAGGCGACAAAAC
CGTTTATGAACGGAGACGGTTTTATCCGTCTGAAAAAAGCGCGCCATCCGCTGCTGCCTCAAGATCAAGTCGTGGCCAAC
GATATTGAACTGGGCGGAGATTATACGACGATCGTTATCACGGGTCCGAATACGGGCGGTAAAACCGTTACGTTAAAAAC
GCTCGGGCTGCTGACGATAATGGCGCAGGCAGGACTGCACATACCGGCTGATGAAGGATCGGAAGCCGCCGTATTTGATC
ATGTTTTTGCCGATATCGGTGATGAACAGTCGATCGAACAAAGCCTGAGTACGTTCTCATCCCACATGGTCAATATCGTC
AGTATTTTAAAAGACGTGTCCGAAAACAGTCTTGTGCTGTTTGATGAACTCGGTGCCGGAACAGACCCGCAGGAAGGGGC
GGCGCTTGCCATGAGCATTCTTGACGAAGTCCACCGCACAAACGCCAGAGTGCTTGCGACAACCCATTATCCGGAGCTGA
AAGCATACGGTTATAACAGACAAGGCGTCATGAATGCAAGCGTTGAATTTGATATTGAAACGCTTTCGCCGACCTACAAG
CTCCTGATCGGAGTGCCGGGCCGAAGCAACGCTTTTGAAATCTCAAGACGCCTCGGCCTGCCGGAGCATATCATCGGCCA
GGCGAAGTCAGAAATGACCGCCGAACACAATGAAGTCGATCTGATGATCGCGTCACTTGAAAAAAGTAAAAAAAGAGCGG
ATGAAGAGCTTTCTGAAACCGAATCAATCCGAAAAGAAGCAGAAAAACTGCATAAAGAGCTGCAGCAGCAAATCATTGAG
CTGAATGCTCAGAAAGACACACTGATGGAAGAAGCCGAACAAAAAGCAGCGGAAAAACTGGAAGACGCCGCAAAAGAAGC
GGAACAGATCATTCGCGAGCTCCGGTCTATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATTGATGCCAAAA
AACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAAGCAGCCGGAAAGAAAAACAGAGAAAAAACGCGAGCTGAAG
CCGGGTGACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAAAAAACCGGCGAGAAAGAATGGAATGT
CCAAATCGGCATCCTTAAAATGAAGGTGAAGGAAAAAGATCTTGAGTTTCTCAAGTCCGCTCCTGAACCGAAAAAAGAAA
AAGCCATCACCGCCGTAAAAGGGAAGGATTATCACGTGTCCCTTGAACTTGACCTGCGGGGAGAGCGTTACGAAAATGCC
CTCAGCCGCGTCGAAAAGTATTTAGATGACGCGGTGCTTGCCGGCTATCCGAGAGTGTCCATCATTCACGGAAAAGGCAC
GGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAAAAACCACCGCAGCGTAAAAAGCTCGCGGTTCGGGGAAGCGGGAG
AAGGAGGATCAGGCGTAACGATTGTCGAACTAAAATAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)

MutS domain V (MutS_V)

(331-512)

Smr domain (Smr)

(710-785)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

87.516

100

0.875