Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IMO23_RS17775 Genome accession   NZ_CP062919
Coordinates   3668264..3669529 (-) Length   421 a.a.
NCBI ID   WP_001285411.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3663264..3674529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS17740 (IMO23_17740) pncA 3663487..3664131 (-) 645 WP_024433003.1 bifunctional nicotinamidase/pyrazinamidase -
  IMO23_RS17745 (IMO23_17745) dapA 3664461..3665354 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  IMO23_RS17750 (IMO23_17750) - 3665370..3665972 (+) 603 WP_001177091.1 hypothetical protein -
  IMO23_RS17755 (IMO23_17755) purC 3666009..3666728 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  IMO23_RS17760 (IMO23_17760) - 3666921..3667124 (+) 204 WP_000418560.1 hypothetical protein -
  IMO23_RS17770 (IMO23_17770) - 3667410..3668249 (+) 840 WP_195707657.1 formate/nitrite transporter family protein -
  IMO23_RS17775 (IMO23_17775) rarA 3668264..3669529 (-) 1266 WP_001285411.1 replication-associated recombination protein A Machinery gene
  IMO23_RS17780 (IMO23_17780) - 3669635..3670807 (-) 1173 WP_000986270.1 PQQ-dependent sugar dehydrogenase -
  IMO23_RS17785 (IMO23_17785) - 3670918..3671376 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  IMO23_RS17790 (IMO23_17790) - 3671571..3671729 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  IMO23_RS17795 (IMO23_17795) - 3671901..3672638 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  IMO23_RS17800 (IMO23_17800) - 3672824..3673186 (+) 363 WP_000130110.1 HIT family protein -
  IMO23_RS17805 (IMO23_17805) mutY 3673327..3674361 (+) 1035 WP_001113863.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46960.62 Da        Isoelectric Point: 5.8354

>NTDB_id=435866 IMO23_RS17775 WP_001285411.1 3668264..3669529(-) (rarA) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=435866 IMO23_RS17775 WP_001285411.1 3668264..3669529(-) (rarA) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAATAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAGGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGATTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41

95.012

0.39