Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FOB44_RS18315 Genome accession   NZ_CP050995
Coordinates   4184220..4184873 (-) Length   217 a.a.
NCBI ID   WP_168239410.1    Uniprot ID   -
Organism   Chryseobacterium gallinarum strain FDAARGOS_636     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4179220..4189873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB44_RS18295 (FOB44_18300) - 4180777..4181346 (+) 570 WP_168239407.1 DUF6705 family protein -
  FOB44_RS18305 (FOB44_18310) der 4181998..4183308 (+) 1311 WP_168239408.1 ribosome biogenesis GTPase Der -
  FOB44_RS18310 (FOB44_18315) upp 4183441..4184091 (+) 651 WP_168239409.1 uracil phosphoribosyltransferase -
  FOB44_RS18315 (FOB44_18320) comF 4184220..4184873 (-) 654 WP_168239410.1 ComF family protein Machinery gene
  FOB44_RS18320 (FOB44_18325) - 4184961..4186439 (-) 1479 WP_050019874.1 helix-turn-helix domain-containing protein -
  FOB44_RS18325 (FOB44_18330) aceB 4186564..4188138 (+) 1575 WP_168239411.1 malate synthase A -
  FOB44_RS18330 (FOB44_18335) aceA 4188248..4189528 (+) 1281 WP_168239412.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25106.11 Da        Isoelectric Point: 8.3577

>NTDB_id=435828 FOB44_RS18315 WP_168239410.1 4184220..4184873(-) (comF) [Chryseobacterium gallinarum strain FDAARGOS_636]
MILDLLFPNRCIHCNRIISPELLVCNVCFDQIHFTHYDFSGNNPVREKCKLLFPVENTYALMQFEEQGLSRKIIHELKYR
SREKAGKILAEWTAERLDFRDKTPDLMVSVPLHPKKLKERGYNQLHLFTETLSILYGIPYHHELIKRNHYSKAQALKDRE
HRLSTANAFSLTQAVTGKHILLIDDVFTTGNTVSSIAWEILNAGNNKISVLVMAMDL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=435828 FOB44_RS18315 WP_168239410.1 4184220..4184873(-) (comF) [Chryseobacterium gallinarum strain FDAARGOS_636]
ATGATACTTGACTTACTTTTCCCTAACCGCTGCATTCACTGTAATCGAATTATCAGTCCTGAACTTCTGGTTTGTAATGT
ATGTTTTGATCAGATTCATTTTACCCATTATGATTTTTCCGGCAATAATCCGGTCAGGGAAAAGTGTAAATTGCTGTTCC
CTGTTGAAAACACTTATGCTTTAATGCAGTTTGAGGAACAAGGTTTAAGCCGTAAAATCATTCATGAGCTTAAATACAGA
AGCAGAGAAAAGGCAGGAAAAATACTCGCGGAATGGACGGCGGAACGACTGGATTTTAGAGACAAAACACCGGATCTTAT
GGTAAGTGTCCCGCTACATCCGAAAAAATTAAAGGAAAGAGGATATAACCAGCTTCATTTATTTACAGAGACATTATCAA
TATTGTATGGTATTCCGTACCACCATGAACTTATTAAAAGAAATCATTATTCAAAAGCACAGGCATTGAAAGACAGGGAG
CATCGTTTAAGTACAGCTAACGCTTTCTCACTTACCCAGGCTGTTACAGGGAAACATATCCTTTTGATTGATGATGTTTT
TACAACCGGGAATACGGTTTCATCTATCGCATGGGAGATTTTAAATGCCGGAAACAATAAAATAAGTGTCCTGGTAATGG
CGATGGATCTTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.315

99.539

0.521