Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SMUGS5_RS09315 Genome accession   NC_018089
Coordinates   1922400..1923665 (+) Length   421 a.a.
NCBI ID   WP_014835060.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917400..1928665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS09280 (SMUGS5_09225) - 1918486..1918680 (+) 195 WP_014835057.1 hypothetical protein -
  SMUGS5_RS09285 (SMUGS5_09230) - 1918708..1919004 (-) 297 WP_002262359.1 LacI family DNA-binding transcriptional regulator -
  SMUGS5_RS09290 (SMUGS5_09235) - 1919066..1919809 (-) 744 WP_014835058.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SMUGS5_RS09295 (SMUGS5_09240) prmA 1919810..1920763 (-) 954 WP_014835059.1 50S ribosomal protein L11 methyltransferase -
  SMUGS5_RS09300 - 1920991..1921288 (-) 298 Protein_1810 LlsX family protein -
  SMUGS5_RS09305 (SMUGS5_09245) - 1921301..1921771 (-) 471 WP_002262363.1 DUF3013 family protein -
  SMUGS5_RS09310 (SMUGS5_09250) - 1921919..1922410 (+) 492 WP_002266252.1 GNAT family N-acetyltransferase -
  SMUGS5_RS09315 (SMUGS5_09255) rarA 1922400..1923665 (+) 1266 WP_014835060.1 replication-associated recombination protein A Machinery gene
  SMUGS5_RS09325 (SMUGS5_09260) - 1924072..1925988 (-) 1917 WP_014835061.1 heavy metal translocating P-type ATPase -
  SMUGS5_RS09330 (SMUGS5_09265) - 1926087..1926881 (+) 795 WP_014835062.1 MerR family transcriptional regulator -
  SMUGS5_RS09335 (SMUGS5_09270) - 1927050..1928075 (-) 1026 WP_002269770.1 YeiH family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46413.81 Da        Isoelectric Point: 6.5113

>NTDB_id=43578 SMUGS5_RS09315 WP_014835060.1 1922400..1923665(+) (rarA) [Streptococcus mutans GS-5]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
VALTDTERGFDFEVKLDDDALDFIATATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDAHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKDKIDKLS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=43578 SMUGS5_RS09315 WP_014835060.1 1922400..1923665(+) (rarA) [Streptococcus mutans GS-5]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCGGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTG
CAAGAAATTGCCGAAGAAGCTAAATTTTCAGGTGGCTTAGTTTTACTTTTGGATGAAATCCATCGTCTGGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGCGTTCAGATTTTTGAGTTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GTAGCTCTGACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAACTAGATGATGATGCTCTTGACTTCATTGCGACAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGCCCACTAT
GATGTCTTATCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCGC
AGATTCATACAGTAACAGCGCTGGAAGCAGCCCAAAGAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAAAGCGG
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCACTGGGGGCTAACAAAGACAAGATTGATAAACTTTCATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-414)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.615

98.812

0.589

Multiple sequence alignment